Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HLB43_RS01105 Genome accession   NZ_CP055224
Coordinates   254897..256423 (-) Length   508 a.a.
NCBI ID   WP_011095701.1    Uniprot ID   -
Organism   Pectobacterium atrosepticum strain Green1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 249897..261423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLB43_RS01080 (HLB43_01080) ytfR 250052..251572 (+) 1521 WP_039295311.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  HLB43_RS01085 (HLB43_01085) ytfT 251559..252569 (+) 1011 WP_011095705.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  HLB43_RS01090 (HLB43_01090) yjfF 252569..253531 (+) 963 WP_011095704.1 galactofuranose ABC transporter, permease protein YjfF -
  HLB43_RS01095 (HLB43_01095) hdfR 253553..254380 (-) 828 WP_011095703.1 HTH-type transcriptional regulator HdfR -
  HLB43_RS01100 (HLB43_01100) - 254501..254839 (+) 339 WP_011095702.1 DUF413 domain-containing protein -
  HLB43_RS01105 (HLB43_01105) comM 254897..256423 (-) 1527 WP_011095701.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HLB43_RS01110 (HLB43_01110) ilvL 256819..256917 (+) 99 WP_071531109.1 ilv operon leader peptide -
  HLB43_RS01115 (HLB43_01115) ilvG 257058..258704 (+) 1647 WP_011095700.1 acetolactate synthase 2 catalytic subunit -
  HLB43_RS01120 (HLB43_01120) ilvM 258782..259042 (+) 261 WP_011095699.1 acetolactate synthase 2 small subunit -
  HLB43_RS01125 (HLB43_01125) - 259067..259993 (+) 927 WP_011095698.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55551.29 Da        Isoelectric Point: 6.9623

>NTDB_id=456890 HLB43_RS01105 WP_011095701.1 254897..256423(-) (comM) [Pectobacterium atrosepticum strain Green1]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLNRYEFLGELGLSGTLRGVNGAIPAALEAIKAGRQLILPDDNKREMTLIPQGEALMAGHL
LQVCAFLSGEEELLSCSDMTPVPQPAEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIERHCKLEMADAAYLEDVMNKLGLSVRAWHRILKVARTIADLGDRD
NIEKKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=456890 HLB43_RS01105 WP_011095701.1 254897..256423(-) (comM) [Pectobacterium atrosepticum strain Green1]
ATGTCATTGGCAGTTACCTACACTCGGGCAATGATTGGTGTACAAGCTCCGGATGTTTACATCGAAGTTCACATCAGCAG
CGGGTTACCTGCATTAACGCTGGTGGGGTTACCAGAAACCACCGTCAAAGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGGTTTACGTTTCCAGCAAAGCGCATCACAGTCAACCTCGCACCGGCAGACTTGCCCAAAGAAGGGGGACGC
TACGACTTGCCCATTGCTCTGGCGATTCTGGCAGCATCAGAACAAATCGATGGTGAAAAGCTAAACCGCTATGAGTTTCT
CGGCGAACTCGGCCTCTCAGGCACGTTACGTGGCGTAAATGGCGCGATTCCAGCCGCATTAGAAGCCATAAAAGCAGGCC
GTCAGCTTATCCTGCCAGATGACAACAAACGGGAGATGACGCTGATACCGCAGGGAGAAGCGCTAATGGCTGGGCATCTG
TTGCAGGTGTGTGCTTTTCTCAGCGGAGAAGAGGAACTACTCAGTTGCTCCGATATGACGCCCGTTCCGCAGCCTGCGGA
AGATACGCTCGACCTGAAGGATATTATCGGTCAGGAGCAAGCTAAACGCGCGCTAGAAATCGCGGCAGCAGGCGGCCACA
ATCTGCTGTTGCTAGGGCCACCTGGAACAGGGAAAACAATGCTGGCAAGTCGGCTAGGCAATCTGATGCCGCCATTGAGC
GATGAAGAAGCGTTAGAAAGCGCCGCGATCAATAGCCTAATCAACATTGATGCCACAATGACGCGCTGGAGAGCAAGACC
CTTCAGAGCGCCTCACCATAGCTCTTCCATGGCTGCACTCGTGGGTGGAGGGTCGCTGCCCAAACCCGGCGAAATTTCGC
TCGCACACAACGGTGTACTGTTTCTAGATGAATTACCAGAGTTTGAGCGACGCGTTCTGGACTCACTACGAGAGCCTCTG
GAATCTGGTGAAATTATCATTTCCCGCACTCGCGCCAAAGTGTGCTATCCGGCACGCGTACAACTCGTCGCCGCGATGAA
CCCCAGTCCGTCGGGCCATTATCAGGGCATTCATAACCGGTTACCTGCACAACAAATATTGCGCTATCTCAGCAAACTTT
CTGGCCCCTTTTTGGATCGCTTTGACCTTTCTATCGAAGTCCCTTTGCTACCACCAGGGGTTTTATCTCAACAACATTAT
CAAGGCGAAAGCAGCGCGACGATTCGTGAGCGCGTGCTGATCGCAAGGCAGATACAGTTGAAGCGGGCAAATAAAATCAA
TGCGCTGCTAACTTCACGCGAAATAGAAAGACACTGCAAATTGGAGATGGCCGATGCGGCCTATCTGGAAGACGTGATGA
ATAAACTTGGCTTATCCGTACGCGCCTGGCATAGGATATTGAAAGTCGCTCGCACGATCGCTGACCTCGGCGATCGGGAC
AACATTGAGAAAAAGCATCTTGCCGAAGCACTGAGCTACCGTTGTATGGATCGATTGCTTATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.229

99.606

0.64
  comM Glaesserella parasuis strain SC1401

63.654

100

0.638
  comM Vibrio cholerae strain A1552

64.016

99.016

0.634
  comM Vibrio campbellii strain DS40M4

62.451

99.606

0.622
  comM Legionella pneumophila str. Paris

50.501

98.228

0.496
  comM Legionella pneumophila strain ERS1305867

50.501

98.228

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.498

100

0.47