Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUW55_RS02945 Genome accession   NZ_CP055161
Coordinates   636699..637229 (+) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain JW-CZ2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 631699..642229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW55_RS02930 maa 631722..632279 (+) 558 WP_049299927.1 maltose O-acetyltransferase -
  HUW55_RS02935 - 632311..633363 (-) 1053 WP_004936787.1 NAD(P)-dependent alcohol dehydrogenase -
  HUW55_RS02940 uvrA 633593..636421 (-) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  HUW55_RS02945 ssb 636699..637229 (+) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HUW55_RS02950 - 637278..637973 (-) 696 WP_049299926.1 class I SAM-dependent methyltransferase -
  HUW55_RS02955 - 637985..638365 (-) 381 WP_049299925.1 hypothetical protein -
  HUW55_RS02960 - 638523..638999 (+) 477 WP_049299924.1 Rrf2 family transcriptional regulator -
  HUW55_RS02965 - 639050..639799 (-) 750 WP_049299923.1 3-oxoacyl-ACP reductase family protein -
  HUW55_RS02970 - 639927..640844 (+) 918 WP_015379210.1 LysR family transcriptional regulator -
  HUW55_RS02975 - 640900..641160 (-) 261 WP_004936809.1 YdgH/BhsA/McbA-like domain containing protein -
  HUW55_RS02980 - 641356..641799 (+) 444 WP_004936812.1 lipocalin-like domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=456560 HUW55_RS02945 WP_004936793.1 636699..637229(+) (ssb) [Serratia marcescens strain JW-CZ2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=456560 HUW55_RS02945 WP_004936793.1 636699..637229(+) (ssb) [Serratia marcescens strain JW-CZ2]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364