NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	HUW35_RS05765	Genome accession	NZ_CP055157
Coordinates	1357154..1358644 (+)	Length	496 a.a.
NCBI ID	WP_181254665.1	Uniprot ID	A0A7H8PWS8
Organism	Microbulbifer sp. YPW1
Function	ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	1351729..1365513	1357154..1358644	within	0

Gene organization within MGE regions

Location: 1351729..1365513

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUW35_RS05725 (HUW35_05730)	xerC	1351735..1352667 (+)	933	WP_370464615.1	tyrosine recombinase XerC	-
HUW35_RS05730 (HUW35_05735)	-	1352859..1353071 (-)	213	WP_181254659.1	hypothetical protein	-
HUW35_RS05735 (HUW35_05740)	-	1353173..1353388 (-)	216	WP_181254660.1	hypothetical protein	-
HUW35_RS05740 (HUW35_05745)	-	1353495..1353833 (-)	339	WP_043319767.1	P-II family nitrogen regulator	-
HUW35_RS05745 (HUW35_05750)	-	1353947..1355206 (-)	1260	WP_181254661.1	ammonium transporter	-
HUW35_RS05750 (HUW35_05755)	-	1355297..1355635 (-)	339	WP_181254662.1	P-II family nitrogen regulator	-
HUW35_RS05755 (HUW35_05760)	-	1355694..1356419 (-)	726	WP_181254663.1	TorF family putative porin	-
HUW35_RS05760 (HUW35_05765)	-	1356857..1357078 (+)	222	WP_181254664.1	accessory factor UbiK family protein	-
HUW35_RS05765 (HUW35_05770)	comM	1357154..1358644 (+)	1491	WP_181254665.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
HUW35_RS05770 (HUW35_05775)	-	1358631..1359191 (-)	561	WP_181254666.1	GNAT family N-acetyltransferase	-
HUW35_RS05775 (HUW35_05780)	bla	1359191..1360066 (-)	876	WP_255463509.1	subclass B3 metallo-beta-lactamase	-
HUW35_RS05780 (HUW35_05785)	-	1360169..1360624 (-)	456	WP_181254667.1	YaiI/YqxD family protein	-
HUW35_RS05785 (HUW35_05790)	-	1360624..1360857 (-)	234	WP_181254668.1	DUF3565 domain-containing protein	-
HUW35_RS05790 (HUW35_05795)	-	1360931..1362361 (-)	1431	WP_181254669.1	hypothetical protein	-
HUW35_RS05795 (HUW35_05800)	-	1362439..1363311 (-)	873	WP_181254670.1	helix-turn-helix domain-containing protein	-
HUW35_RS05800 (HUW35_05805)	rep	1363480..1365513 (+)	2034	WP_181254671.1	DNA helicase Rep	-

Sequence

Protein

Download Length: 496 a.a. Molecular weight: 53293.94 Da Isoelectric Point: 7.3636

                                >NTDB_id=456441 HUW35_RS05765 WP_181254665.1 1357154..1358644(+) (comM) [Microbulbifer sp. YPW1]

MSLSITYARAQLGIQAPLVTVETHLANGLPAFNIVGLPEAAVRESRDRVRSAIVNSHFEFPQRRITVNLAPADLPKAGGR

YDLAIALGILAASGQVPGETLENYEFIGELALSGSLRPIPGALPAAMACRDSGRTLVTDTDSAREAALIATPIKSATTLL

QVCAQLHGREPLPDAVQDTEQEAVICADLADVRGQLKARRALEVAAAGAHNLLFYGPPGTGKTMLASRLPGILPPLAENE

LIEVAALYSSAGLDRVRQRPFRAPHHSASPTALVGGGSNPRPGEISLAHRGVLFLDEMPEFPRSALEILREPLENGEVRI

SRARAQVTFPADFQLVAAMNPCPCGYLGEPRCRCTPDQIDRYRNKLSGPLLDRIDMQVEVASMSASQLQDAPVGESSESV

RNRVRSAREIQLARQGKINGELKGSELDEYCRLGKAESALLRASVEKLGLSARSYHRVLKVARTLADLSGQENIGTVQIA

EALAYRNLDRKTVMPA

Nucleotide

Download Length: 1491 bp

                                >NTDB_id=456441 HUW35_RS05765 WP_181254665.1 1357154..1358644(+) (comM) [Microbulbifer sp. YPW1]

GTGAGCCTATCCATTACCTACGCCCGCGCACAGCTGGGCATTCAGGCGCCGCTGGTGACCGTGGAAACCCACCTCGCCAA

CGGACTCCCCGCATTCAATATCGTCGGCTTGCCGGAGGCAGCGGTACGCGAAAGCCGCGACCGGGTGCGCAGCGCCATCG

TCAACAGCCACTTCGAATTCCCCCAGCGGCGTATCACCGTCAACCTGGCCCCGGCAGACCTGCCCAAGGCCGGCGGGCGC

TACGATCTCGCCATTGCCCTGGGCATCCTCGCCGCGTCCGGGCAGGTGCCCGGTGAGACACTGGAAAACTACGAGTTCAT

CGGCGAGCTGGCACTGTCCGGCAGCCTGCGCCCGATCCCGGGCGCCCTGCCCGCCGCCATGGCCTGTCGCGACAGCGGCC

GCACCCTGGTCACCGACACCGACTCCGCCAGGGAAGCGGCACTGATCGCAACACCCATCAAATCCGCCACCACGCTGTTA

CAGGTCTGCGCGCAGCTGCACGGTCGCGAGCCGCTGCCCGATGCGGTACAGGACACAGAACAGGAAGCGGTTATCTGCGC

GGACCTGGCAGACGTGCGCGGGCAGCTGAAAGCACGACGTGCACTGGAGGTGGCTGCGGCAGGTGCGCACAACCTCCTTT

TCTATGGTCCCCCTGGTACGGGAAAGACGATGCTGGCCAGCCGCCTGCCCGGGATACTGCCACCGCTGGCGGAAAACGAG

CTGATCGAGGTGGCGGCGCTCTACTCCAGTGCCGGGCTGGATCGCGTGCGCCAGCGCCCGTTTCGCGCCCCGCACCATTC

CGCCTCCCCCACCGCGCTGGTGGGCGGCGGCAGTAACCCCCGGCCCGGCGAGATCAGCCTGGCCCATCGCGGTGTGCTGT

TCCTGGATGAAATGCCGGAGTTCCCGCGCTCCGCGCTGGAAATACTGCGCGAGCCGCTGGAGAACGGCGAGGTGCGCATC

TCCCGCGCCCGCGCCCAGGTCACCTTTCCCGCCGACTTCCAGCTGGTAGCGGCGATGAATCCCTGCCCCTGCGGATATCT

CGGCGAACCCCGCTGCCGCTGCACCCCGGACCAGATCGATCGCTACCGCAACAAGCTATCCGGGCCCCTGCTGGACCGCA

TCGACATGCAGGTGGAAGTCGCGAGCATGAGTGCCAGCCAGCTGCAGGATGCACCGGTGGGAGAAAGCTCGGAGAGCGTG

CGCAACCGGGTGCGCAGCGCGCGTGAAATCCAGCTGGCGCGACAGGGAAAAATAAACGGCGAGTTGAAAGGCAGTGAGCT

GGACGAATACTGTCGCTTGGGCAAAGCGGAAAGCGCCCTGCTGCGCGCCTCGGTGGAAAAGCTTGGCTTGTCTGCGCGCA

GTTATCACCGGGTATTGAAAGTGGCGCGCACGCTGGCGGATTTATCCGGGCAGGAAAATATCGGTACCGTACAAATTGCG

GAGGCGCTGGCCTATCGCAACCTGGATCGTAAAACTGTCATGCCGGCATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(394-486)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7H8PWS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	55.09	100	0.556
comM	Haemophilus influenzae Rd KW20	53.293	100	0.538
comM	Vibrio campbellii strain DS40M4	53.614	100	0.538
comM	Glaesserella parasuis strain SC1401	51.697	100	0.522
comM	Legionella pneumophila str. Paris	49.9	100	0.504
comM	Legionella pneumophila strain ERS1305867	49.9	100	0.504
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.016	100	0.466

Detailed information NTG0456441