Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUW51_RS11475 Genome accession   NZ_CP055156
Coordinates   2641729..2642175 (-) Length   148 a.a.
NCBI ID   WP_185274168.1    Uniprot ID   A0A7G7G832
Organism   Adhaeribacter swui strain KCTC 52873     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2636729..2647175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW51_RS11455 (HUW51_11455) - 2637338..2637523 (+) 186 WP_185274166.1 hypothetical protein -
  HUW51_RS11460 (HUW51_11460) recG 2637534..2639627 (-) 2094 WP_185274167.1 ATP-dependent DNA helicase RecG -
  HUW51_RS11465 (HUW51_11465) gldD 2639745..2640365 (-) 621 WP_228467007.1 gliding motility lipoprotein GldD -
  HUW51_RS11470 (HUW51_11470) gldE 2640325..2641692 (-) 1368 WP_228467045.1 gliding motility-associated protein GldE -
  HUW51_RS11475 (HUW51_11475) ssb 2641729..2642175 (-) 447 WP_185274168.1 single-stranded DNA-binding protein Machinery gene
  HUW51_RS11480 (HUW51_11480) mutY 2642224..2643306 (-) 1083 WP_185274169.1 A/G-specific adenine glycosylase -
  HUW51_RS11485 (HUW51_11485) - 2643508..2643813 (+) 306 WP_185274170.1 HU family DNA-binding protein -
  HUW51_RS11490 (HUW51_11490) - 2643862..2644758 (+) 897 WP_228467008.1 tetratricopeptide repeat protein -
  HUW51_RS11495 (HUW51_11495) - 2645001..2646614 (+) 1614 WP_185274171.1 Rne/Rng family ribonuclease -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16232.98 Da        Isoelectric Point: 5.2896

>NTDB_id=456427 HUW51_RS11475 WP_185274168.1 2641729..2642175(-) (ssb) [Adhaeribacter swui strain KCTC 52873]
MASVNKVILVGNLGKDPEVRHLEGGVAVARFPIATSETFKDKNGEKQERTEWHNIVVWRGLADVAEKYLKKGQSVYIEGK
IRTSNYQDKEGIQRYSTEIVADNMTMLGGRSDAGNGNQNQYSGGTSAGNNRTETPAPAFEGEPDDLPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=456427 HUW51_RS11475 WP_185274168.1 2641729..2642175(-) (ssb) [Adhaeribacter swui strain KCTC 52873]
ATGGCAAGTGTTAATAAAGTAATTTTGGTGGGTAATCTGGGTAAAGATCCGGAAGTACGTCATTTAGAAGGCGGCGTAGC
CGTTGCCCGTTTCCCGATTGCCACCTCCGAAACTTTTAAAGATAAAAATGGCGAAAAGCAGGAACGCACCGAGTGGCACA
ACATTGTGGTATGGCGCGGTTTAGCCGACGTAGCAGAAAAATATTTAAAAAAAGGACAGTCGGTATACATTGAAGGTAAA
ATCCGAACCAGCAATTACCAGGATAAAGAAGGTATTCAGCGCTACTCCACCGAAATTGTAGCCGATAACATGACTATGCT
GGGTGGCCGGAGCGATGCCGGCAATGGCAATCAAAACCAATATTCGGGCGGAACCTCTGCTGGCAACAACCGGACAGAAA
CGCCGGCCCCGGCTTTTGAAGGTGAACCCGATGATTTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7G832

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

43.889

100

0.534
  ssb Neisseria gonorrhoeae MS11

48.026

100

0.493
  ssb Vibrio cholerae strain A1552

55.372

81.757

0.453
  ssb Neisseria meningitidis MC58

56.14

77.027

0.432
  ssb Latilactobacillus sakei subsp. sakei 23K

31.579

100

0.365