Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JGU77_RS02465 Genome accession   NZ_CP066806
Coordinates   513423..514547 (+) Length   374 a.a.
NCBI ID   WP_000228525.1    Uniprot ID   -
Organism   Escherichia coli strain TCM3e1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 508423..519547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGU77_RS02440 (JGU77_02440) mscL 508549..508959 (-) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -
  JGU77_RS02445 (JGU77_02445) trkA 509089..510465 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  JGU77_RS02450 (JGU77_02450) rsmB 510487..511776 (-) 1290 WP_001361938.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JGU77_RS02455 (JGU77_02455) fmt 511822..512769 (-) 948 WP_000004466.1 methionyl-tRNA formyltransferase -
  JGU77_RS02460 (JGU77_02460) def 512784..513293 (-) 510 WP_000114986.1 peptide deformylase -
  JGU77_RS02465 (JGU77_02465) dprA 513423..514547 (+) 1125 WP_000228525.1 DNA-protecting protein DprA Machinery gene
  JGU77_RS02470 (JGU77_02470) smg 514519..514992 (+) 474 WP_000460682.1 DUF494 family protein Smg -
  JGU77_RS02475 (JGU77_02475) yrdD 515021..515563 (+) 543 WP_001129723.1 type I DNA topoisomerase -
  JGU77_RS02480 (JGU77_02480) tsaC 515568..516140 (+) 573 WP_001361937.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  JGU77_RS02485 (JGU77_02485) aroE 516145..516963 (+) 819 WP_000451226.1 shikimate dehydrogenase -
  JGU77_RS02490 (JGU77_02490) yrdB 516960..517217 (+) 258 WP_001070584.1 DUF1488 domain-containing protein -
  JGU77_RS02495 (JGU77_02495) yrdA 517193..517747 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40933.83 Da        Isoelectric Point: 6.1402

>NTDB_id=456412 JGU77_RS02465 WP_000228525.1 513423..514547(+) (dprA) [Escherichia coli strain TCM3e1]
MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLSWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHAPLATSLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPLGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=456412 JGU77_RS02465 WP_000228525.1 513423..514547(+) (dprA) [Escherichia coli strain TCM3e1]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTACGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACTGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTCTTGGTTGGAGCAACCCAACCATCATTTAATTCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTTGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTTAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCGCGTCGCCATGCTCCACTGGCTACCAGTTTGCT
TGAACATGGTGGGGCTCTTGTCTCGGAATTTCCCCTCGATGTTCCTCCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCGGGTCCATTAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTAACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (WHD_DprA)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.509

98.663

0.479
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

48.71

82.888

0.404
  dprA Vibrio cholerae strain A1552

48.71

82.888

0.404
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Legionella pneumophila strain ERS1305867

43.363

90.642

0.393
  dprA Haemophilus influenzae Rd KW20

43.62

90.107

0.393