Detailed information NTG0455730

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: JFJ84_RS01500
• Genome accession: NZ_CP066739
• Coordinates: 288519..289526 (+)
• Length: 335 a.a.
• NCBI ID: WP_011608424.1
• Uniprot ID: B0UVK4
• Organism: Histophilus somni strain ASc-MMNZ-VFA-069
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 283519..294526

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JFJ84_RS01485 (JFJ84_01480)	comQ	284053..284328 (+)	276	WP_411814732.1	DUF5374 domain-containing protein	Machinery gene
JFJ84_RS01490 (JFJ84_01485)	recC	284381..287815 (+)	3435	WP_012340558.1	exodeoxyribonuclease V subunit gamma	-
JFJ84_RS01495 (JFJ84_01490)	ruvA	287894..288508 (+)	615	WP_011608423.1	Holliday junction branch migration protein RuvA	Machinery gene
JFJ84_RS01500 (JFJ84_01495)	ruvB	288519..289526 (+)	1008	WP_011608424.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
JFJ84_RS01505 (JFJ84_01500)	-	289640..290848 (-)	1209	WP_012340582.1	NAD(P)/FAD-dependent oxidoreductase	-
JFJ84_RS01510 (JFJ84_01505)	cmoB	290848..291813 (-)	966	WP_012340593.1	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	-
JFJ84_RS01515 (JFJ84_01510)	putP	291816..293330 (-)	1515	WP_012340603.1	sodium/proline symporter PutP	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37249.83 Da
• Isoelectric Point: 4.7362

>NTDB_id=455730 JFJ84_RS01500 WP_011608424.1 288519..289526(+) (ruvB) [Histophilus somni strain ASc-MMNZ-VFA-069]
MIEVDRIVSANAKVDDEYIDRAIRPKLLSDYIGQPQVREQMEIFIQAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLASIVTRSAVCLQLEIDVEAGQEIACRSRGTPRIANRLLRRVRDYADVKNGG
KITALIAQEALKMLDVDLAGFDFMDRKLLQAIIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSRTYRHFGLEQIEK

Nucleotide

• Length: 1008 bp

>NTDB_id=455730 JFJ84_RS01500 WP_011608424.1 288519..289526(+) (ruvB) [Histophilus somni strain ASc-MMNZ-VFA-069]
ATGATTGAAGTAGATCGCATTGTAAGTGCCAATGCAAAAGTAGACGATGAATATATTGATCGTGCAATTCGCCCTAAATT
ATTGAGTGATTATATCGGTCAACCTCAAGTTAGAGAGCAAATGGAAATTTTCATCCAAGCAGCAAAATTACGCCAAGATG
CACTTGATCATTTGTTAATTTTTGGACCCCCTGGACTAGGAAAAACAACGTTGGCGAATATTGTTGCCAATGAAATGGGA
GTGAATATTCGTACTACTTCAGGTCCGGTTTTAGAAAAAGCGGGGGATTTGGCGGCAATGCTAACGAATCTTGAGCCTCA
TGATGTATTATTCATTGATGAAATTCATCGCTTATCACCAGCTATTGAGGAAGTTCTTTATCCAGCGATGGAAGATTATC
AACTGGATATTATGATTGGAGAAGGTCCTGCTGCCCGTTCAATAAAGCTGGATTTACCGCCTTTTACGCTGATTGGAGCA
ACAACAAGAGCAGGCTCTTTGACTTCTCCATTACGAGATCGATTCGGTATTGTGCAGCGACTGGAGTTTTATTCTGTAGA
GGATTTAGCTTCCATTGTTACTCGAAGTGCGGTCTGTTTGCAGCTTGAAATTGATGTTGAAGCAGGACAAGAAATTGCTT
GTCGTTCACGAGGTACCCCACGTATTGCAAATCGCCTATTACGCCGAGTGCGAGATTATGCCGATGTCAAAAATGGTGGG
AAAATTACCGCACTTATTGCACAAGAAGCACTGAAGATGCTGGATGTGGATCTTGCAGGATTTGATTTTATGGATCGTAA
ATTATTACAGGCAATTATTGAGCGGTTTGATGGTGGACCTGTAGGATTGGATAATTTGGCGGCGGCAATTGGCGAAGAGC
GAGATACCATTGAAGATGTATTGGAGCCTTATTTAATTCAGCAAGGATTTTTACAACGGACACCTCGTGGAAGAATAGCA
ACATCAAGAACTTATCGACATTTTGGTTTGGAACAGATTGAAAAATAG

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

3D structure

• AlphaFold DB: B0UVK4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	63.609	97.612	0.621
ruvB	Streptococcus pneumoniae TIGR4	58.133	99.104	0.576
ruvB	Streptococcus pneumoniae R6	58.133	99.104	0.576
ruvB	Streptococcus pneumoniae D39	58.133	99.104	0.576
ruvB	Synechocystis sp. PCC 6803	55.732	93.731	0.522
ruvB	Helicobacter pylori 26695	57.237	90.746	0.519