Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   JFJ84_RS01495 Genome accession   NZ_CP066739
Coordinates   287894..288508 (+) Length   204 a.a.
NCBI ID   WP_011608423.1    Uniprot ID   B0UVK3
Organism   Histophilus somni strain ASc-MMNZ-VFA-069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 282894..293508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFJ84_RS01480 (JFJ84_01475) comP 283350..284030 (+) 681 WP_011608420.1 DUF2572 family protein Machinery gene
  JFJ84_RS01485 (JFJ84_01480) comQ 284053..284328 (+) 276 WP_411814732.1 DUF5374 domain-containing protein Machinery gene
  JFJ84_RS01490 (JFJ84_01485) recC 284381..287815 (+) 3435 WP_012340558.1 exodeoxyribonuclease V subunit gamma -
  JFJ84_RS01495 (JFJ84_01490) ruvA 287894..288508 (+) 615 WP_011608423.1 Holliday junction branch migration protein RuvA Machinery gene
  JFJ84_RS01500 (JFJ84_01495) ruvB 288519..289526 (+) 1008 WP_011608424.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  JFJ84_RS01505 (JFJ84_01500) - 289640..290848 (-) 1209 WP_012340582.1 NAD(P)/FAD-dependent oxidoreductase -
  JFJ84_RS01510 (JFJ84_01505) cmoB 290848..291813 (-) 966 WP_012340593.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
  JFJ84_RS01515 (JFJ84_01510) putP 291816..293330 (-) 1515 WP_012340603.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22637.63 Da        Isoelectric Point: 8.0493

>NTDB_id=455729 JFJ84_RS01495 WP_011608423.1 287894..288508(+) (ruvA) [Histophilus somni strain ASc-MMNZ-VFA-069]
MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHLLFGFSHKQDRSLFRELIKTNG
VGPKLALAILSAMSVNEFVYAIEQEELSKLVKIPGVGKKTAERLLVELKGKFKGLQQTDFFIKSSHLPGIKCSKLDQSLQ
LDEAVSALIALGYKPIEAEKMVKKVLKADLTSEQLIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=455729 JFJ84_RS01495 WP_011608423.1 287894..288508(+) (ruvA) [Histophilus somni strain ASc-MMNZ-VFA-069]
ATGATTGGGCGTGTAACAGGAATACTGGTTGAAAAACAAGCTCCGGAAATTTTACTGGATGTTCAAGGTGTTGGGTATGA
GTTACTTTTACCCATGACAAGTTTTTATAATTTGCCGGAAGTTGGGCAGGAAACTACGTTGTTTACGCATTTTGTGGTGC
GTGAAGATGCTCATTTGTTATTTGGATTTAGCCATAAACAAGACCGCTCTTTATTTCGTGAATTGATTAAAACCAATGGA
GTTGGACCAAAATTAGCTTTAGCTATCCTGTCTGCGATGTCAGTGAATGAATTTGTGTATGCGATTGAACAAGAAGAATT
ATCTAAATTAGTCAAAATTCCCGGAGTAGGAAAAAAAACTGCTGAACGTTTATTGGTGGAGCTAAAAGGTAAATTTAAAG
GCTTACAACAAACAGATTTCTTTATTAAAAGCTCTCATTTACCTGGAATTAAATGCTCAAAACTGGATCAAAGTTTGCAG
TTGGATGAAGCAGTTTCTGCTTTAATTGCGTTAGGATATAAGCCTATTGAAGCAGAGAAAATGGTTAAAAAAGTGTTAAA
AGCAGATTTAACTAGTGAACAGCTTATTCGAGAGGCTTTGAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(161-202)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0UVK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.321

100

0.382
  ruvA Streptococcus pneumoniae TIGR4

36.765

100

0.368
  ruvA Streptococcus pneumoniae R6

36.765

100

0.368
  ruvA Streptococcus pneumoniae D39

36.765

100

0.368