Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUZ54_RS24215 Genome accession   NZ_CP055003
Coordinates   4953402..4953908 (-) Length   168 a.a.
NCBI ID   WP_048292476.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain STIN_79     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4948402..4958908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ54_RS24205 (HUZ54_24160) - 4948851..4951109 (-) 2259 WP_021441030.1 TonB-dependent siderophore receptor -
  HUZ54_RS24210 (HUZ54_24165) - 4951697..4953277 (+) 1581 WP_021441029.1 lytic transglycosylase F -
  HUZ54_RS24215 (HUZ54_24170) ssb 4953402..4953908 (-) 507 WP_048292476.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HUZ54_RS24220 (HUZ54_24175) uvrA 4954160..4956985 (+) 2826 WP_004146620.1 excinuclease ABC subunit UvrA -
  HUZ54_RS24225 (HUZ54_24180) - 4956986..4957342 (-) 357 WP_002884953.1 MmcQ/YjbR family DNA-binding protein -
  HUZ54_RS24230 (HUZ54_24185) - 4957346..4957762 (-) 417 WP_002884951.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HUZ54_RS24235 (HUZ54_24190) aphA 4957893..4958606 (-) 714 WP_004151745.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18301.27 Da        Isoelectric Point: 5.2358

>NTDB_id=455681 HUZ54_RS24215 WP_048292476.1 4953402..4953908(-) (ssb) [Klebsiella pneumoniae strain STIN_79]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAPSNEPPM
DFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=455681 HUZ54_RS24215 WP_048292476.1 4953402..4953908(-) (ssb) [Klebsiella pneumoniae strain STIN_79]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCTCAGGTGTACATT
GAAGGCCAGCTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACCGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCCAGCAGCAGGGCGGTTGGGGTCAGCCGCAGCAGCCGCAGG
GCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGGCCCCGGCAGCGCCTTCCAACGAACCGCCGATG
GACTTCGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.778

100

0.78
  ssb Glaesserella parasuis strain SC1401

58.791

100

0.637
  ssb Neisseria meningitidis MC58

47.458

100

0.5
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.5
  ssbA Bacillus subtilis subsp. subtilis str. 168

35

100

0.375