Detailed information NTG0455593

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: JFL57_RS08620
• Genome accession: NZ_CP066565
• Coordinates: 1896836..1897843 (-)
• Length: 335 a.a.
• NCBI ID: WP_075293663.1
• Uniprot ID: A0A9Q6Z125
• Organism: Histophilus somni strain ASc-MMNZ-VFA-076
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1891836..1902843

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JFL57_RS08605 (JFL57_08605)	putP	1893032..1894546 (+)	1515	WP_075293662.1	sodium/proline symporter PutP	-
JFL57_RS08610 (JFL57_08610)	cmoB	1894549..1895514 (+)	966	WP_012340593.1	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	-
JFL57_RS08615 (JFL57_08615)	-	1895514..1896722 (+)	1209	WP_198986909.1	NAD(P)/FAD-dependent oxidoreductase	-
JFL57_RS08620 (JFL57_08620)	ruvB	1896836..1897843 (-)	1008	WP_075293663.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
JFL57_RS08625 (JFL57_08625)	ruvA	1897854..1898468 (-)	615	WP_075293664.1	Holliday junction branch migration protein RuvA	Machinery gene
JFL57_RS08630 (JFL57_08630)	recC	1898547..1901981 (-)	3435	WP_075293665.1	exodeoxyribonuclease V subunit gamma	-
JFL57_RS08635 (JFL57_08635)	comQ	1902034..1902288 (-)	255	WP_415874044.1	DUF5374 domain-containing protein	Machinery gene

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37235.80 Da
• Isoelectric Point: 4.7323

>NTDB_id=455593 JFL57_RS08620 WP_075293663.1 1896836..1897843(-) (ruvB) [Histophilus somni strain ASc-MMNZ-VFA-076]
MIEVDRIVSANAKVDDEYIDRAIRPKLLSDYIGQPQVREQMEIFIQAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLASIVTRSAVCLQLEIDVDAGQEIACRSRGTPRIANRLLRRVRDYADVKNGG
KITALIAQEALKMLDVDLAGFDFMDRKLLQAIIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSRTYRHFGLEQIEK

Nucleotide

• Length: 1008 bp

>NTDB_id=455593 JFL57_RS08620 WP_075293663.1 1896836..1897843(-) (ruvB) [Histophilus somni strain ASc-MMNZ-VFA-076]
ATGATTGAAGTAGATCGCATTGTAAGTGCCAATGCAAAAGTAGACGATGAATATATTGATCGTGCAATTCGCCCTAAATT
ATTGAGTGATTATATCGGTCAACCTCAAGTTAGAGAGCAAATGGAAATTTTCATCCAAGCAGCAAAATTACGCCAAGATG
CACTTGATCATTTGTTAATTTTTGGACCCCCTGGACTAGGAAAAACAACGTTGGCGAATATTGTTGCCAATGAAATGGGA
GTGAATATTCGTACTACTTCAGGTCCGGTTTTAGAAAAAGCGGGGGATTTAGCGGCAATGCTAACGAACCTTGAACCTCA
TGATGTATTATTCATTGATGAAATTCATCGCTTATCACCAGCTATTGAGGAAGTTCTTTATCCGGCGATGGAAGATTATC
AACTGGATATTATGATTGGAGAAGGTCCTGCTGCCCGTTCAATAAAGCTGGATTTACCGCCTTTTACGCTGATTGGAGCA
ACAACAAGAGCAGGCTCTTTGACTTCTCCATTACGAGATCGATTCGGTATTGTGCAGCGACTGGAGTTTTATTCTGTAGA
GGATTTAGCTTCCATTGTTACTCGAAGTGCGGTCTGTTTGCAGCTTGAAATTGATGTTGACGCAGGACAAGAAATTGCTT
GTCGTTCACGAGGTACCCCACGTATTGCAAATCGCCTATTACGCCGAGTGCGAGATTATGCCGATGTCAAAAATGGTGGG
AAAATTACCGCACTTATTGCTCAAGAAGCACTGAAGATGCTGGATGTGGATCTTGCAGGATTTGATTTTATGGATCGTAA
ATTATTACAGGCAATTATTGAGCGGTTTGATGGCGGACCTGTAGGATTGGATAATTTGGCGGCGGCAATTGGCGAAGAGC
GAGATACTATTGAAGATGTATTGGAGCCTTATTTAATTCAGCAAGGATTTTTACAACGGACACCTCGTGGAAGAATAGCA
ACATCAAGAACTTATCGACATTTTGGTTTGGAACAGATTGAAAAATAG

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

3D structure

• AlphaFold DB: A0A9Q6Z125

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	63.609	97.612	0.621
ruvB	Streptococcus pneumoniae TIGR4	57.831	99.104	0.573
ruvB	Streptococcus pneumoniae R6	57.831	99.104	0.573
ruvB	Streptococcus pneumoniae D39	57.831	99.104	0.573
ruvB	Synechocystis sp. PCC 6803	55.732	93.731	0.522
ruvB	Helicobacter pylori 26695	56.908	90.746	0.516