Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   JFL57_RS08625 Genome accession   NZ_CP066565
Coordinates   1897854..1898468 (-) Length   204 a.a.
NCBI ID   WP_075293664.1    Uniprot ID   A0A9Q6Z0E0
Organism   Histophilus somni strain ASc-MMNZ-VFA-076     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1892854..1903468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL57_RS08605 (JFL57_08605) putP 1893032..1894546 (+) 1515 WP_075293662.1 sodium/proline symporter PutP -
  JFL57_RS08610 (JFL57_08610) cmoB 1894549..1895514 (+) 966 WP_012340593.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
  JFL57_RS08615 (JFL57_08615) - 1895514..1896722 (+) 1209 WP_198986909.1 NAD(P)/FAD-dependent oxidoreductase -
  JFL57_RS08620 (JFL57_08620) ruvB 1896836..1897843 (-) 1008 WP_075293663.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  JFL57_RS08625 (JFL57_08625) ruvA 1897854..1898468 (-) 615 WP_075293664.1 Holliday junction branch migration protein RuvA Machinery gene
  JFL57_RS08630 (JFL57_08630) recC 1898547..1901981 (-) 3435 WP_075293665.1 exodeoxyribonuclease V subunit gamma -
  JFL57_RS08635 (JFL57_08635) comQ 1902034..1902288 (-) 255 WP_415874044.1 DUF5374 domain-containing protein Machinery gene
  JFL57_RS08640 (JFL57_08640) comP 1902332..1903012 (-) 681 WP_075293666.1 DUF2572 family protein Machinery gene

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22621.59 Da        Isoelectric Point: 8.0493

>NTDB_id=455594 JFL57_RS08625 WP_075293664.1 1897854..1898468(-) (ruvA) [Histophilus somni strain ASc-MMNZ-VFA-076]
MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHLLFGFSHKQDRSLFRELIKTNG
VGPKLALAILSAMSVNEFVYAIEQEELSKLVKIPGVGKKTAERLLVELKGKFKGLQQTDFFIKSSHLPGIKCSKPDQSLQ
LDEAVSALIALGYKPIEAEKMVKKVLKADLTSEQLIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=455594 JFL57_RS08625 WP_075293664.1 1897854..1898468(-) (ruvA) [Histophilus somni strain ASc-MMNZ-VFA-076]
ATGATTGGGCGTGTAACAGGAATACTGGTTGAAAAACAAGCTCCGGAAATTTTACTGGATGTTCAAGGTGTTGGGTATGA
GTTACTTTTACCCATGACAAGTTTTTATAATTTGCCGGAAGTTGGGCAGGAAACTACGTTGTTTACGCATTTTGTAGTGC
GTGAAGATGCTCATTTGTTATTTGGATTTAGCCATAAACAAGACCGCTCTTTATTTCGTGAATTGATTAAAACCAATGGA
GTTGGACCAAAATTAGCTTTAGCTATCCTGTCTGCGATGTCAGTGAATGAATTTGTGTATGCGATTGAACAAGAAGAATT
ATCTAAATTAGTCAAAATTCCCGGAGTAGGAAAAAAAACTGCTGAACGTTTATTGGTGGAGCTAAAAGGTAAATTTAAAG
GCTTACAACAAACAGATTTCTTTATTAAAAGCTCTCATTTACCTGGAATTAAATGCTCAAAACCGGATCAAAGTTTGCAG
TTGGATGAAGCAGTTTCTGCTTTAATTGCGTTAGGATATAAGCCTATTGAAGCAGAGAAAATGGTTAAAAAAGTGTTAAA
AGCAGATTTAACTAGTGAACAGCTTATTCGAGAGGCTTTGAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(161-202)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6Z0E0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.321

100

0.382
  ruvA Streptococcus pneumoniae TIGR4

36.765

100

0.368
  ruvA Streptococcus pneumoniae R6

36.765

100

0.368
  ruvA Streptococcus pneumoniae D39

36.765

100

0.368