Detailed information NTG0455537

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: JFL55_RS08850
• Genome accession: NZ_CP066564
• Coordinates: 1896740..1897747 (-)
• Length: 335 a.a.
• NCBI ID: WP_011608424.1
• Uniprot ID: B0UVK4
• Organism: Histophilus somni strain ASc-MMNZ-VFA-69
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1891740..1902747

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JFL55_RS08835 (JFL55_08835)	putP	1892936..1894450 (+)	1515	WP_012340603.1	sodium/proline symporter PutP	-
JFL55_RS08840 (JFL55_08840)	cmoB	1894453..1895418 (+)	966	WP_012340593.1	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	-
JFL55_RS08845 (JFL55_08845)	-	1895418..1896626 (+)	1209	WP_012340582.1	NAD(P)/FAD-dependent oxidoreductase	-
JFL55_RS08850 (JFL55_08850)	ruvB	1896740..1897747 (-)	1008	WP_011608424.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
JFL55_RS08855 (JFL55_08855)	ruvA	1897758..1898372 (-)	615	WP_011608423.1	Holliday junction branch migration protein RuvA	Machinery gene
JFL55_RS08860 (JFL55_08860)	recC	1898451..1901885 (-)	3435	WP_012340558.1	exodeoxyribonuclease V subunit gamma	-
JFL55_RS08865 (JFL55_08865)	comQ	1901938..1902255 (-)	318	WP_012340547.1	DUF5374 domain-containing protein	Machinery gene

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37249.83 Da
• Isoelectric Point: 4.7362

>NTDB_id=455537 JFL55_RS08850 WP_011608424.1 1896740..1897747(-) (ruvB) [Histophilus somni strain ASc-MMNZ-VFA-69]
MIEVDRIVSANAKVDDEYIDRAIRPKLLSDYIGQPQVREQMEIFIQAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLASIVTRSAVCLQLEIDVEAGQEIACRSRGTPRIANRLLRRVRDYADVKNGG
KITALIAQEALKMLDVDLAGFDFMDRKLLQAIIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSRTYRHFGLEQIEK

Nucleotide

• Length: 1008 bp

>NTDB_id=455537 JFL55_RS08850 WP_011608424.1 1896740..1897747(-) (ruvB) [Histophilus somni strain ASc-MMNZ-VFA-69]
ATGATTGAAGTAGATCGCATTGTAAGTGCCAATGCAAAAGTAGACGATGAATATATTGATCGTGCAATTCGCCCTAAATT
ATTGAGTGATTATATCGGTCAACCTCAAGTTAGAGAGCAAATGGAAATTTTCATCCAAGCAGCAAAATTACGCCAAGATG
CACTTGATCATTTGTTAATTTTTGGACCCCCTGGACTAGGAAAAACAACGTTGGCGAATATTGTTGCCAATGAAATGGGA
GTGAATATTCGTACTACTTCAGGTCCGGTTTTAGAAAAAGCGGGGGATTTGGCGGCAATGCTAACGAATCTTGAGCCTCA
TGATGTATTATTCATTGATGAAATTCATCGCTTATCACCAGCTATTGAGGAAGTTCTTTATCCAGCGATGGAAGATTATC
AACTGGATATTATGATTGGAGAAGGTCCTGCTGCCCGTTCAATAAAGCTGGATTTACCGCCTTTTACGCTGATTGGAGCA
ACAACAAGAGCAGGCTCTTTGACTTCTCCATTACGAGATCGATTCGGTATTGTGCAGCGACTGGAGTTTTATTCTGTAGA
GGATTTAGCTTCCATTGTTACTCGAAGTGCGGTCTGTTTGCAGCTTGAAATTGATGTTGAAGCAGGACAAGAAATTGCTT
GTCGTTCACGAGGTACCCCACGTATTGCAAATCGCCTATTACGCCGAGTGCGAGATTATGCCGATGTCAAAAATGGTGGG
AAAATTACCGCACTTATTGCACAAGAAGCACTGAAGATGCTGGATGTGGATCTTGCAGGATTTGATTTTATGGATCGTAA
ATTATTACAGGCAATTATTGAGCGGTTTGATGGTGGACCTGTAGGATTGGATAATTTGGCGGCGGCAATTGGCGAAGAGC
GAGATACCATTGAAGATGTATTGGAGCCTTATTTAATTCAGCAAGGATTTTTACAACGGACACCTCGTGGAAGAATAGCA
ACATCAAGAACTTATCGACATTTTGGTTTGGAACAGATTGAAAAATAG

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

3D structure

• AlphaFold DB: B0UVK4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	63.609	97.612	0.621
ruvB	Streptococcus pneumoniae TIGR4	58.133	99.104	0.576
ruvB	Streptococcus pneumoniae R6	58.133	99.104	0.576
ruvB	Streptococcus pneumoniae D39	58.133	99.104	0.576
ruvB	Synechocystis sp. PCC 6803	55.732	93.731	0.522
ruvB	Helicobacter pylori 26695	57.237	90.746	0.519