Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   JFL55_RS08865 Genome accession   NZ_CP066564
Coordinates   1901938..1902255 (-) Length   105 a.a.
NCBI ID   WP_012340547.1    Uniprot ID   A0A9Q6K6P7
Organism   Histophilus somni strain ASc-MMNZ-VFA-69     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1896938..1907255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL55_RS08855 (JFL55_08855) ruvA 1897758..1898372 (-) 615 WP_011608423.1 Holliday junction branch migration protein RuvA Machinery gene
  JFL55_RS08860 (JFL55_08860) recC 1898451..1901885 (-) 3435 WP_012340558.1 exodeoxyribonuclease V subunit gamma -
  JFL55_RS08865 (JFL55_08865) comQ 1901938..1902255 (-) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  JFL55_RS08870 (JFL55_08870) comP 1902236..1902916 (-) 681 WP_011608420.1 DUF2572 family protein Machinery gene
  JFL55_RS08875 (JFL55_08875) comO 1902919..1903596 (-) 678 WP_080514398.1 type II secretion system protein J Machinery gene
  JFL55_RS08880 (JFL55_08880) comN 1903645..1904172 (-) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JFL55_RS08900 (JFL55_08900) pal 1904847..1905302 (-) 456 WP_012340512.1 peptidoglycan-associated lipoprotein Pal -
  JFL55_RS08905 (JFL55_08905) tolB 1905312..1906616 (-) 1305 WP_012340504.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12552.55 Da        Isoelectric Point: 9.7112

>NTDB_id=455539 JFL55_RS08865 WP_012340547.1 1901938..1902255(-) (comQ) [Histophilus somni strain ASc-MMNZ-VFA-69]
MIFNHYKFPQRGTSLITLLVTMMIFSTLFLFVNQWVSYQRKSAVNIYLRYQALQIAENQHQRLFLEPHFHCPHNIEQNGY
KFKINCEGKNVRVSYANQQVNLLLD

Nucleotide


Download         Length: 318 bp        

>NTDB_id=455539 JFL55_RS08865 WP_012340547.1 1901938..1902255(-) (comQ) [Histophilus somni strain ASc-MMNZ-VFA-69]
ATGATTTTCAACCATTATAAATTTCCTCAACGGGGTACCAGCTTGATCACGTTATTAGTCACAATGATGATATTTTCTAC
ATTATTTTTATTTGTTAATCAATGGGTTAGTTATCAAAGAAAAAGTGCGGTAAATATTTATCTACGTTATCAAGCTTTGC
AAATCGCTGAAAATCAACATCAACGCTTATTTCTAGAACCGCATTTTCATTGTCCGCATAATATCGAGCAAAATGGTTAT
AAGTTTAAGATCAATTGTGAAGGTAAGAATGTACGAGTTTCTTATGCAAATCAACAAGTAAATTTATTGCTTGATTAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6K6P7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

46.667

85.714

0.4