Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   JFL55_RS08870 Genome accession   NZ_CP066564
Coordinates   1902236..1902916 (-) Length   226 a.a.
NCBI ID   WP_011608420.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-69     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1897236..1907916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL55_RS08855 (JFL55_08855) ruvA 1897758..1898372 (-) 615 WP_011608423.1 Holliday junction branch migration protein RuvA Machinery gene
  JFL55_RS08860 (JFL55_08860) recC 1898451..1901885 (-) 3435 WP_012340558.1 exodeoxyribonuclease V subunit gamma -
  JFL55_RS08865 (JFL55_08865) comQ 1901938..1902255 (-) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  JFL55_RS08870 (JFL55_08870) comP 1902236..1902916 (-) 681 WP_011608420.1 DUF2572 family protein Machinery gene
  JFL55_RS08875 (JFL55_08875) comO 1902919..1903596 (-) 678 WP_080514398.1 type II secretion system protein J Machinery gene
  JFL55_RS08880 (JFL55_08880) comN 1903645..1904172 (-) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JFL55_RS08900 (JFL55_08900) pal 1904847..1905302 (-) 456 WP_012340512.1 peptidoglycan-associated lipoprotein Pal -
  JFL55_RS08905 (JFL55_08905) tolB 1905312..1906616 (-) 1305 WP_012340504.1 Tol-Pal system beta propeller repeat protein TolB -
  JFL55_RS08910 (JFL55_08910) tolA 1906644..1907699 (-) 1056 WP_012340495.1 cell envelope integrity protein TolA -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26112.46 Da        Isoelectric Point: 9.7821

>NTDB_id=455540 JFL55_RS08870 WP_011608420.1 1902236..1902916(-) (comP) [Histophilus somni strain ASc-MMNZ-VFA-69]
MNIQKGVVTLTLLMLLSSVLLILLFFDGDLISLHSSIVSQRKIYLEQSLILQRQSISQKEKLCENQPLNNNLKSLKIEFE
SRRKIDRTSQFIWCERKYLFKKRPKKATYEAGLSQYINLELLDLFQHKLHSPPAILPRDKANYLYWVEEKSAELEIQGNI
NAVVIAEGDLKLTGKGKISGTVITGGKLSIEPAVKIVYRSKTIIDLIRSYSYWQFAENSWYDFQPL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=455540 JFL55_RS08870 WP_011608420.1 1902236..1902916(-) (comP) [Histophilus somni strain ASc-MMNZ-VFA-69]
ATGAATATACAAAAAGGAGTTGTAACGCTCACCCTATTAATGCTGTTAAGCTCAGTATTATTAATTTTACTTTTTTTTGA
TGGTGATTTGATTTCGTTGCATTCATCCATTGTTTCTCAACGGAAAATATATTTAGAACAAAGTCTTATATTACAGAGAC
AAAGTATTTCTCAAAAAGAAAAACTTTGTGAAAACCAGCCTCTGAATAATAATTTGAAAAGTTTGAAGATCGAATTTGAA
AGTCGACGAAAAATTGACCGCACTTCTCAATTTATATGGTGTGAAAGAAAATATTTGTTTAAAAAAAGGCCGAAAAAAGC
TACTTATGAGGCAGGGCTAAGTCAGTATATAAATCTTGAGTTACTGGATTTATTTCAACATAAATTACATTCACCGCCTG
CTATTTTGCCGAGAGATAAAGCAAATTATCTCTATTGGGTTGAGGAAAAATCAGCTGAATTGGAGATACAAGGTAATATT
AATGCAGTTGTTATTGCTGAAGGGGATTTGAAGTTAACAGGAAAAGGTAAAATTAGTGGAACGGTTATTACCGGCGGGAA
ATTAAGTATTGAACCAGCAGTTAAAATTGTGTATCGCTCAAAAACAATCATCGATCTTATCCGATCATATAGTTATTGGC
AGTTTGCGGAGAATAGTTGGTATGATTTTCAACCATTATAA

Domains

Predicted by InterProScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

43.946

98.673

0.434