Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOB99_RS04830 Genome accession   NZ_CP054913
Coordinates   1008130..1008666 (-) Length   178 a.a.
NCBI ID   WP_073828084.1    Uniprot ID   -
Organism   Shigella flexneri strain FDAARGOS_691     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1007519..1008022 1008130..1008666 flank 108


Gene organization within MGE regions


Location: 1007519..1008666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB99_RS04830 (FOB99_04835) ssb 1008130..1008666 (-) 537 WP_073828084.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19051.09 Da        Isoelectric Point: 5.2358

>NTDB_id=455304 FOB99_RS04830 WP_073828084.1 1008130..1008666(-) (ssb) [Shigella flexneri strain FDAARGOS_691]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=455304 FOB99_RS04830 WP_073828084.1 1008130..1008666(-) (ssb) [Shigella flexneri strain FDAARGOS_691]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTATAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.691

100

0.77
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.365