Detailed information NTG0455125

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: HUT23_RS30540
• Genome accession: NZ_CP054871
• Coordinates: 6715204..6716697 (+)
• Length: 497 a.a.
• NCBI ID: WP_210482995.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain PPRAR07
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6710204..6721697

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUT23_RS30510 (HUT23_30505)	-	6710739..6711443 (+)	705	WP_210482997.1	HAD family hydrolase	-
HUT23_RS30515 (HUT23_30510)	sutA	6711570..6711893 (-)	324	WP_007926654.1	transcriptional regulator SutA	-
HUT23_RS30520 (HUT23_30515)	-	6711996..6712421 (-)	426	WP_210482996.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
HUT23_RS30525 (HUT23_30520)	-	6712631..6713968 (-)	1338	WP_011064191.1	ammonium transporter	-
HUT23_RS30530 (HUT23_30525)	glnK	6714002..6714340 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
HUT23_RS30535 (HUT23_30530)	-	6714757..6715017 (+)	261	WP_011064192.1	accessory factor UbiK family protein	-
HUT23_RS30540 (HUT23_30535)	comM	6715204..6716697 (+)	1494	WP_210482995.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
HUT23_RS30545 (HUT23_30540)	-	6716702..6717916 (-)	1215	WP_174395267.1	aldose 1-epimerase family protein	-
HUT23_RS30550 (HUT23_30545)	-	6718029..6718607 (-)	579	WP_015637458.1	TetR family transcriptional regulator C-terminal domain-containing protein	-
HUT23_RS30555 (HUT23_30550)	-	6718721..6719647 (+)	927	WP_170866332.1	ABC transporter six-transmembrane domain-containing protein	-
HUT23_RS30560 (HUT23_30555)	-	6719651..6720619 (-)	969	WP_210482994.1	Ca2+-dependent phosphoinositide-specific phospholipase C	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 53093.07 Da
• Isoelectric Point: 8.0954

>NTDB_id=455125 HUT23_RS30540 WP_210482995.1 6715204..6716697(+) (comM) [Pseudomonas protegens strain PPRAR07]
MSLAIIHSRAQVGVQAPAVSVEVHLANGLPSLTLVGLPEAAVKESKDRVRSAILNAGFNFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALALDNIECLGELALSGAVRPVRGVLPAALAARDAGHTLLVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGQAPIAPYVSDGLVQSHFPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLQE
DEALEVAAIQSVASHKPLRYWPQRPFRQPHHSASGAALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GQIVIARARDRVQFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNPEPQP
GNDSAAAATRVAGARELQRERQGCANAFLDLPGLRRHCKLSTTDERWLEAACERLGLSLRAAHRLLKVARTLADLEQAAR
ISREHLAEALHYRPSAD

Nucleotide

• Length: 1494 bp

>NTDB_id=455125 HUT23_RS30540 WP_210482995.1 6715204..6716697(+) (comM) [Pseudomonas protegens strain PPRAR07]
ATGTCCCTGGCAATCATCCACAGCCGTGCCCAGGTCGGCGTCCAGGCTCCGGCTGTCAGTGTTGAAGTGCACCTGGCCAA
CGGCTTGCCGAGCCTGACCCTGGTGGGCCTGCCGGAAGCCGCGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCC
TCAATGCCGGGTTCAACTTTCCGGCCCGGCGCATCACCCTCAACCTGGCGCCGGCGGACCTGCCCAAGGACGGCGGGCGC
TTCGATCTGGCCATCGCCCTGGGTATCCTTGCCGCCAGCGTGCAGGTGCCGGCCCTGGCCCTGGACAACATCGAATGCCT
GGGGGAGCTGGCACTGTCCGGCGCGGTGCGCCCGGTACGCGGCGTACTGCCCGCCGCACTGGCGGCACGCGACGCCGGGC
ATACCCTGCTGGTGCCCCGGGCCAATGCCGAAGAAGCCTGCCTAGCCAGCGGCCTAAAGGTGATCGCGGTGGATCATCTG
CTGGAGGCCGTTGCCCATTTCAACGGCCAGGCGCCGATTGCGCCCTATGTCAGCGACGGCCTGGTGCAGAGCCACTTCCC
CTACCCCGACCTCAGCGAAGTGCAAGGCCAGCTCGCCGCCAAGCGCGCCCTGCTGATCGCCGCGGCGGGCGCCCACAACC
TGTTGTTCAGCGGCCCGCCAGGCACCGGCAAGACCCTGTTGGCCAGCCGCTTGCCCGGCCTGCTGCCACCGTTGCAGGAA
GATGAAGCCCTGGAAGTCGCGGCGATCCAGTCGGTGGCCAGCCACAAGCCCCTGCGCTACTGGCCACAGCGGCCGTTTCG
CCAGCCCCACCATTCGGCTTCGGGTGCGGCACTGGTCGGAGGCGGCTCGAAACCCCAGCCCGGGGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAACTGCCGGAGTTCGACCGCAAGGTCCTGGAAGTGCTGCGCGAGCCCATGGAGTCC
GGGCAGATCGTCATTGCCCGAGCCCGGGACCGGGTGCAGTTCCCGGCACGCTTCCAATTGGTGGCAGCGATGAACCCCTG
CCCTTGTGGATATCTTGGCGAGCCCAGCGGACGCTGCCGTTGCACACCGGAGCAGATCCAGCGCTATCGCAACAAGTTAT
CCGGGCCGCTGCTGGATCGCATCGACCTGCACCTGACCGTGGCCCGCGAAGCCACCGCCCTCAACCCCGAGCCGCAACCA
GGCAATGACAGCGCCGCAGCCGCCACCAGGGTCGCCGGGGCTCGCGAGCTGCAACGCGAGCGCCAGGGCTGCGCCAACGC
CTTTCTCGACCTGCCCGGCCTGCGTCGCCACTGCAAATTATCCACAACCGACGAGCGCTGGCTGGAAGCGGCCTGCGAAC
GCCTGGGCCTGTCGTTGCGGGCCGCTCACCGTTTGCTCAAGGTGGCGCGTACCCTGGCGGACCTGGAACAGGCCGCGCGA
ATCAGCCGCGAGCACCTGGCCGAAGCCCTGCATTACCGGCCCAGCGCCGATTGA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-493)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	55.758	99.598	0.555
comM	Vibrio cholerae strain A1552	55.556	99.598	0.553
comM	Haemophilus influenzae Rd KW20	54.691	100	0.551
comM	Glaesserella parasuis strain SC1401	54.709	100	0.549
comM	Legionella pneumophila str. Paris	50.198	100	0.511
comM	Legionella pneumophila strain ERS1305867	50.198	100	0.511
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.328	100	0.459