Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HUT27_RS28720 Genome accession   NZ_CP054867
Coordinates   6396638..6398131 (+) Length   497 a.a.
NCBI ID   WP_041985083.1    Uniprot ID   A0A554PJC4
Organism   Pseudomonas chlororaphis strain PCLRT02     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6391638..6403131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT27_RS28700 (HUT27_28700) - 6392020..6392748 (+) 729 WP_124355519.1 formyltransferase family protein -
  HUT27_RS28705 (HUT27_28705) - 6392745..6395144 (+) 2400 WP_150085988.1 PEP/pyruvate-binding domain-containing protein -
  HUT27_RS28710 (HUT27_28710) - 6395141..6395773 (+) 633 WP_124355521.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  HUT27_RS28715 (HUT27_28715) - 6395780..6396529 (+) 750 WP_041985080.1 phosphocholine cytidylyltransferase family protein -
  HUT27_RS28720 (HUT27_28720) comM 6396638..6398131 (+) 1494 WP_041985083.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HUT27_RS28725 (HUT27_28725) - 6398138..6399352 (-) 1215 WP_210532669.1 aldose 1-epimerase family protein -
  HUT27_RS28730 (HUT27_28730) - 6399459..6400034 (-) 576 WP_009051542.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  HUT27_RS28735 (HUT27_28735) - 6400149..6401075 (+) 927 WP_172833387.1 ABC transporter six-transmembrane domain-containing protein -
  HUT27_RS28740 (HUT27_28740) - 6401080..6402051 (-) 972 WP_028683659.1 Ca2+-dependent phosphoinositide-specific phospholipase C -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53475.55 Da        Isoelectric Point: 8.2657

>NTDB_id=455075 HUT27_RS28720 WP_041985083.1 6396638..6398131(+) (comM) [Pseudomonas chlororaphis strain PCLRT02]
MSLAIVHSRAQTGVQAPAVSVEVHLANGLPALTLVGLPEAAVKESKDRVRSAILNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTLALENVECLGELALSGAVRPVRGVLPAALAARQAGRMLMVPRANAEEACLASGLKVIAVEHL
LEAVAHFNGHTPIEPYASDGLLYQNRPYPDLNEVQGQLAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLEE
QEALEVAAIQSVTSHIPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GQIVIARARDRVHFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARESTALNPKPPA
GDNTAQAAALVARARERQQRRQGCANAFLDLPGLRRHCQLSTTDERWLETACERLTLSLRAAHRLLKVARTLADLEQVEQ
ISREHLAEALQYRPAAS

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=455075 HUT27_RS28720 WP_041985083.1 6396638..6398131(+) (comM) [Pseudomonas chlororaphis strain PCLRT02]
ATGTCTCTGGCCATCGTCCACAGCCGTGCCCAGACCGGCGTGCAAGCGCCGGCCGTGTCGGTCGAAGTCCATCTGGCCAA
CGGCCTGCCGGCCCTGACTCTGGTGGGCCTGCCCGAAGCGGCGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAATGCCGGCTTCGATTTTCCGGCCCGGCGCATCACCCTCAACCTCGCCCCGGCCGACCTGCCCAAGGACGGCGGGCGC
TTCGACCTGGCAATTGCCCTGGGCATTCTTGCCGCCAGCGTGCAGGTGCCGACACTGGCCCTGGAGAATGTCGAATGCCT
GGGCGAGCTGGCGCTTTCAGGCGCGGTTCGCCCGGTGCGCGGCGTGCTGCCGGCGGCCCTGGCCGCGCGCCAGGCCGGCC
GCATGCTGATGGTGCCGCGCGCGAATGCCGAGGAAGCCTGCCTGGCCTCAGGACTGAAGGTGATTGCCGTCGAGCATTTG
CTGGAAGCCGTCGCTCACTTCAACGGCCACACCCCGATCGAGCCCTATGCCTCGGACGGCCTGCTCTACCAGAACCGCCC
CTATCCCGACCTGAATGAAGTGCAGGGCCAACTGGCTGCCAAACGCGCGCTGCTGGTGGCCGCGGCCGGTGCGCACAACC
TGCTGTTCAGCGGCCCACCAGGCACCGGCAAGACCTTGCTGGCCAGCCGCCTGCCTGGCCTGTTGCCGCCGCTGGAGGAA
CAGGAAGCCCTGGAAGTGGCCGCCATCCAGTCGGTCACCAGCCACATTCCCCTGAGCCATTGGCCGCAACGGCCCTTCCG
TCAACCTCATCACTCGGCTTCTGGACCGGCGCTGGTGGGGGGTGGCTCGAAACCGCAACCCGGGGAAATCACACTCGCCC
ATCACGGTGTGCTGTTCCTCGATGAATTGCCGGAATTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAACCCCTGGAGTCG
GGGCAGATCGTCATTGCCCGGGCCCGCGACCGGGTACATTTCCCCGCGCGCTTCCAGTTGGTGGCAGCAATGAACCCCTG
CCCCTGTGGATATCTGGGCGAACCCAGTGGCCGCTGCCGCTGCACACCGGAGCAGATCCAGCGTTATCGCAACAAGCTCT
CGGGGCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTGGCCCGGGAAAGCACGGCCCTCAACCCCAAGCCCCCGGCT
GGGGACAACACCGCGCAAGCCGCGGCCCTGGTGGCCCGCGCCCGGGAGCGGCAACAGCGACGCCAGGGTTGCGCCAATGC
TTTTCTCGACCTGCCGGGCCTGCGCCGGCATTGCCAGTTATCCACAACCGACGAGCGCTGGCTGGAAACCGCCTGCGAAC
GCCTGACCTTGTCCCTGCGCGCCGCCCACCGCCTGCTCAAGGTCGCCCGCACCCTGGCGGACCTCGAGCAGGTCGAGCAG
ATCAGCCGCGAGCACCTGGCCGAAGCGCTGCAATACCGGCCGGCCGCGAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A554PJC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.96

99.598

0.557
  comM Vibrio cholerae strain A1552

55.556

99.598

0.553
  comM Haemophilus influenzae Rd KW20

54.4

100

0.547
  comM Glaesserella parasuis strain SC1401

54.2

100

0.545
  comM Legionella pneumophila str. Paris

49.395

99.799

0.493
  comM Legionella pneumophila strain ERS1305867

49.395

99.799

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.23

100

0.469