Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JF380_RS03745 Genome accession   NZ_CP066492
Coordinates   780967..782049 (+) Length   360 a.a.
NCBI ID   WP_001808057.1    Uniprot ID   -
Organism   Staphylococcus aureus strain nan_175_F371_ch     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 775967..787049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JF380_RS03725 (JF380_03725) gdpS 776338..777408 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  JF380_RS03730 (JF380_03730) - 777726..778781 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  JF380_RS03735 (JF380_03735) - 778952..779593 (-) 642 WP_000192947.1 YigZ family protein -
  JF380_RS03740 (JF380_03740) fakB1 779737..780603 (+) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  JF380_RS03745 (JF380_03745) comFA 780967..782049 (+) 1083 WP_001808057.1 DEAD/DEAH box helicase Machinery gene
  JF380_RS03750 (JF380_03750) - 782042..782716 (+) 675 WP_001057965.1 ComF family protein -
  JF380_RS03755 (JF380_03755) hpf 782777..783349 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JF380_RS03760 (JF380_03760) secA 783763..786294 (+) 2532 WP_000506408.1 preprotein translocase subunit SecA -
  JF380_RS03765 (JF380_03765) - 786336..786440 (+) 105 WP_001790092.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42049.57 Da        Isoelectric Point: 9.6803

>NTDB_id=455053 JF380_RS03745 WP_001808057.1 780967..782049(+) (comFA) [Staphylococcus aureus strain nan_175_F371_ch]
MDNVTRYKITESSQSSSQAYYHLSFEMSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYIQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=455053 JF380_RS03745 WP_001808057.1 780967..782049(+) (comFA) [Staphylococcus aureus strain nan_175_F371_ch]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAAAT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATATTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364