Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HUI97_RS00785 Genome accession   NZ_CP054855
Coordinates   172593..174107 (-) Length   504 a.a.
NCBI ID   WP_206900910.1    Uniprot ID   -
Organism   Aeromonas veronii strain 1708-29120     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 167593..179107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUI97_RS00755 (HUI97_00755) pncB 167627..168805 (-) 1179 WP_206900905.1 nicotinate phosphoribosyltransferase -
  HUI97_RS00760 (HUI97_00760) - 168807..169442 (-) 636 WP_005357452.1 nicotinamidase -
  HUI97_RS00765 (HUI97_00765) - 169517..170167 (+) 651 WP_206900906.1 NUDIX hydrolase -
  HUI97_RS00770 (HUI97_00770) - 170164..170670 (+) 507 WP_206900907.1 DUF523 domain-containing protein -
  HUI97_RS00775 (HUI97_00775) - 170595..171560 (-) 966 WP_206900908.1 acyltransferase -
  HUI97_RS00780 (HUI97_00780) - 171567..172466 (-) 900 WP_206900909.1 acyltransferase -
  HUI97_RS00785 (HUI97_00785) comM 172593..174107 (-) 1515 WP_206900910.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HUI97_RS00790 (HUI97_00790) ilvG 174492..176153 (+) 1662 WP_206900911.1 acetolactate synthase 2 catalytic subunit -
  HUI97_RS00795 (HUI97_00795) ilvM 176150..176440 (+) 291 WP_206900912.1 acetolactate synthase 2 small subunit -
  HUI97_RS00800 (HUI97_00800) - 176453..177397 (+) 945 WP_206900913.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54591.51 Da        Isoelectric Point: 7.7279

>NTDB_id=454978 HUI97_RS00785 WP_206900910.1 172593..174107(-) (comM) [Aeromonas veronii strain 1708-29120]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLASRDAGRTLLVPRENGPEASLIKDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLVARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=454978 HUI97_RS00785 WP_206900910.1 172593..174107(-) (comM) [Aeromonas veronii strain 1708-29120]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTTGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCGAGCAAACACATCACAGTCAATCTGGCGCCCGCCGATCTGCCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGCATTCTCGCAGCTTCCAAACAAATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACCGGAGAGATCCGTCCCGTGCTCGGGGTGTTGCCCGCCGTGCTCGCCAGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGGGAAAACGGCCCGGAAGCCTCCCTCATTAAGGATGCCGAGGTGCGCACCGCCCACCAGTTG
CTGGCCGTCACCGCCTGGCTGGCCGGTCAGTACGAGCTGCCGCTACCAGACCCCCAAAGCGCGGAGAGCCTGCCCGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACTGGCAAGAGCATGCTAGCGAGCCGTCTGCCCGGCATCTTGCCGCCCCTGAGTGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCGCGCGCCGGTCACTGGCATCACAGGCCCTATCG
CACGCCCCATCACAGCGCCTCGGCGGTGGCGCTGGTGGGAGGCGGCAGCCACCCAAGGCCCGGCGAAATTTCGTTGGCCC
ACAACGGAGTGCTGTTTCTGGATGAATTGCCTGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACA
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTCGATTTTCCCGCCCGCTTCCAGCTGGTGGGTGCCATGAACCCCAG
CCCTTGCGGACACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGATCTGACTGTGGAAGTGCCACTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGATCGGGTACTGGTGGCACGGGAGCGCATGCTGAGTCGCAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCCTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGTGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.546

99.603

0.633
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464