Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HUO05_RS13030 Genome accession   NZ_CP054700
Coordinates   2787298..2788821 (+) Length   507 a.a.
NCBI ID   WP_005383862.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain GS_MYPK1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2782298..2793821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUO05_RS13015 (HUO05_13015) ilvE 2783940..2784878 (-) 939 WP_025768922.1 branched-chain-amino-acid transaminase -
  HUO05_RS13020 (HUO05_13020) ilvM 2784891..2785175 (-) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  HUO05_RS13025 (HUO05_13025) ilvG 2785187..2786833 (-) 1647 WP_005378960.1 acetolactate synthase 2 catalytic subunit -
  HUO05_RS13030 (HUO05_13030) comM 2787298..2788821 (+) 1524 WP_005383862.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HUO05_RS13035 (HUO05_13035) - 2788877..2789833 (-) 957 WP_005379034.1 DUF2860 domain-containing protein -
  HUO05_RS13040 (HUO05_13040) - 2789983..2790861 (+) 879 WP_017821568.1 acyltransferase -
  HUO05_RS13045 (HUO05_13045) - 2790908..2791510 (-) 603 WP_005379036.1 thiol:disulfide interchange protein DsbA/DsbL -
  HUO05_RS13050 (HUO05_13050) - 2791545..2792531 (-) 987 WP_005379037.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55007.10 Da        Isoelectric Point: 9.0584

>NTDB_id=454038 HUO05_RS13030 WP_005383862.1 2787298..2788821(+) (comM) [Vibrio alginolyticus strain GS_MYPK1]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALEASKIQRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLFQTPKRKTIEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAIVKARVSHARNNMLNRSGKVNALLGSREIEAFCPLHKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGAEQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=454038 HUO05_RS13030 WP_005383862.1 2787298..2788821(+) (comM) [Vibrio alginolyticus strain GS_MYPK1]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGCGTCGGGGTGCAAGCGCCATCGGTTAGTGTAGAAGTTCATATCAGCAA
CGGCATGCCAGGGTTTACCTTAGTAGGCTTGCCAGAGACAACGGTAAAAGAGTCCAAAGATCGCGTACGCAGTGCGATCA
TTAATTCTAACTTTCAATTTCCTGCTAAGCGGATCACCGTGAACTTGGCTCCGGCAGATCTACCCAAGGAGGGAGGGCGT
TTTGATCTTCCTATTGCATTGGGAATTTTGGCCGCTTCGGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAGTTAGCGTTATCTGGTGGTCTGAGACCTGTAAAAGGTGTGCTGCCTGCTGCGCTGGAAGCCAGTAAGATTCAAC
GTCATTTGGTCGTCCCACATGTGAATGGCGATCAGGCGGCGCTGGTGGGGAAGGAACAACATAAATCGGCCCAATCATTA
CTGGAAGTATGTGCCGAGCTTTGTGGTCAACATCGACTGAATCTTTTTCAAACGCCTAAGCGAAAAACGATCGAAAAACA
TGGTCGAGACTTACAAGATATTATTGGCCAACAACAAGGTAAGCGAGCACTGGAGATTGCTGCCGCTGGAAACCACAACT
TACTTTTCCTTGGCCCGCCAGGTACTGGAAAAACGATGTTGGCTTCGCGTTTGTGTGACTTATTACCGGAAATGAGTGAC
GAAGAAGCAATGGAAACCGCTTCGGTGGCATCGTTGACTCAGAGTGAAATTAATGAGCATAACTGGAAGTCGCGTCCGTT
TCGTTCTCCGCATCATTCAAGTTCAATGGCGGCATTAGTCGGCGGTGGTTCGGTACCCAGACCAGGGGAGATCTCTCTAG
CCCACAACGGGTTATTGTTTCTCGATGAAATGCCCGAATTTGATCGTAAAGTTCTGGACTCGTTACGCGAACCGCTCGAA
TCTGGAGAGATCATTATCTCTCGAGCGCAAGGTAAAACACGCTTTCCGGCTCGTTTCCAATTAGTCGGAGCCTTGAACCC
AAGCCCGACAGGATATTACGAAGGCAATCAAGCGCGCACCAATCCACAAGCTATTTTGCGCTACCTTGGTCGATTATCTG
GACCACTGTTAGATCGCTTTGATATGTCTTTAGAAATCCCAGCTTTGCCCAAAGGGACATTAGCAGAAGGTGGTGATCGC
GGTGAGCCGACTGCTATCGTAAAAGCGCGTGTGAGCCATGCGCGTAACAATATGCTAAACCGCAGTGGTAAGGTCAATGC
ACTGCTAGGTAGTCGAGAAATTGAGGCGTTTTGTCCCTTGCATAAGAGTGATGCTGAGTTTCTTGAAACCGCTTTGCATC
GTTTAGGGCTCTCGATTCGTGCATATCATCGTATTATCAAAGTGGCGCGAACAATCGCCGATCTGGATGGGGCGGAGCAA
ATTGAACGAACGCACTTGGCCGAGGCGCTTGGGTATCGAGCGATGGACCGTTTGCTGAAACAGCTTACGGCGCAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.477

100

0.945
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.483

100

0.655
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

48.992

97.83

0.479
  comM Legionella pneumophila strain ERS1305867

48.992

97.83

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.478

99.803

0.434