Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUO05_RS11080 Genome accession   NZ_CP054700
Coordinates   2369875..2370414 (-) Length   179 a.a.
NCBI ID   WP_005381235.1    Uniprot ID   A0AAW9BS04
Organism   Vibrio alginolyticus strain GS_MYPK1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2364875..2375414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUO05_RS11060 (HUO05_11060) - 2365194..2365526 (-) 333 WP_005381196.1 hypothetical protein -
  HUO05_RS11065 (HUO05_11065) gspM 2365519..2366169 (-) 651 WP_005381197.1 type II secretion system protein GspM -
  HUO05_RS11070 (HUO05_11070) - 2366166..2367611 (-) 1446 WP_176311178.1 MSHA biogenesis protein MshI -
  HUO05_RS11075 (HUO05_11075) csrD 2367623..2369632 (-) 2010 WP_176311179.1 RNase E specificity factor CsrD -
  HUO05_RS11080 (HUO05_11080) ssb 2369875..2370414 (-) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  HUO05_RS11085 (HUO05_11085) qstR 2370692..2371336 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  HUO05_RS11090 (HUO05_11090) galU 2371496..2372368 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HUO05_RS11095 (HUO05_11095) uvrA 2372518..2375340 (+) 2823 WP_033907424.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19892.93 Da        Isoelectric Point: 4.9164

>NTDB_id=454027 HUO05_RS11080 WP_005381235.1 2369875..2370414(-) (ssb) [Vibrio alginolyticus strain GS_MYPK1]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=454027 HUO05_RS11080 WP_005381235.1 2369875..2370414(-) (ssb) [Vibrio alginolyticus strain GS_MYPK1]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTATTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

46.328

98.883

0.458
  ssb Neisseria gonorrhoeae MS11

46.328

98.883

0.458