Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HUO05_RS11085 Genome accession   NZ_CP054700
Coordinates   2370692..2371336 (+) Length   214 a.a.
NCBI ID   WP_005381237.1    Uniprot ID   A0A2I3CB98
Organism   Vibrio alginolyticus strain GS_MYPK1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2365692..2376336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUO05_RS11070 (HUO05_11070) - 2366166..2367611 (-) 1446 WP_176311178.1 MSHA biogenesis protein MshI -
  HUO05_RS11075 (HUO05_11075) csrD 2367623..2369632 (-) 2010 WP_176311179.1 RNase E specificity factor CsrD -
  HUO05_RS11080 (HUO05_11080) ssb 2369875..2370414 (-) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  HUO05_RS11085 (HUO05_11085) qstR 2370692..2371336 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  HUO05_RS11090 (HUO05_11090) galU 2371496..2372368 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HUO05_RS11095 (HUO05_11095) uvrA 2372518..2375340 (+) 2823 WP_033907424.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24397.32 Da        Isoelectric Point: 9.8721

>NTDB_id=454028 HUO05_RS11085 WP_005381237.1 2370692..2371336(+) (qstR) [Vibrio alginolyticus strain GS_MYPK1]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=454028 HUO05_RS11085 WP_005381237.1 2370692..2371336(+) (qstR) [Vibrio alginolyticus strain GS_MYPK1]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACAGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACAGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CB98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.86

100

0.949
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519