Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   JDY60_RS09620 Genome accession   NZ_CP066172
Coordinates   1672185..1672421 (-) Length   78 a.a.
NCBI ID   WP_000939513.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1667185..1677421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS08005 (JDY60_08005) radA 1667463..1668800 (-) 1338 WP_233848244.1 DNA repair protein RadA Machinery gene
  JDY60_RS08010 (JDY60_08010) - 1668838..1669395 (-) 558 WP_000752155.1 histidine phosphatase family protein -
  JDY60_RS08015 (JDY60_08015) - 1669355..1669798 (-) 444 WP_000701977.1 dUTP diphosphatase -
  JDY60_RS08025 (JDY60_08025) tadA 1669989..1670456 (-) 468 WP_001110100.1 tRNA adenosine(34) deaminase TadA -
  JDY60_RS08030 (JDY60_08030) - 1670657..1671943 (-) 1287 WP_125398133.1 adenylosuccinate synthase -
  JDY60_RS09620 comW 1672185..1672421 (-) 237 WP_000939513.1 sigma(X)-activator ComW Regulator

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9540.11 Da        Isoelectric Point: 9.3157

>NTDB_id=454024 JDY60_RS09620 WP_000939513.1 1672185..1672421(-) (comW) [Streptococcus oralis strain SF100]
MLQKFYDRAFVFLKLVEQEYASLGQSCSEWESLHLRFLLYYLIRFKIKSDRDFSLYHFRTAYRLYLEKLLQGGTTLIQ

Nucleotide


Download         Length: 237 bp        

>NTDB_id=454024 JDY60_RS09620 WP_000939513.1 1672185..1672421(-) (comW) [Streptococcus oralis strain SF100]
ATGCTTCAGAAATTTTATGATCGAGCATTTGTCTTTTTGAAACTAGTTGAACAAGAATATGCCTCTTTAGGCCAGAGTTG
TTCAGAGTGGGAATCACTTCATCTCCGTTTTTTACTATATTACTTAATCCGATTTAAAATTAAAAGTGATAGGGACTTTT
CTCTATATCACTTTAGAACAGCTTATCGTCTATATCTAGAGAAATTACTGCAAGGTGGTACAACTCTCATCCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis NCTC 12261

50

89.744

0.449
  comW Streptococcus mitis SK321

50

89.744

0.449
  comW Streptococcus pneumoniae Rx1

47.143

89.744

0.423
  comW Streptococcus pneumoniae D39

47.143

89.744

0.423
  comW Streptococcus pneumoniae R6

47.143

89.744

0.423
  comW Streptococcus pneumoniae TIGR4

47.143

89.744

0.423