Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JDY60_RS08005 Genome accession   NZ_CP066172
Coordinates   1667463..1668800 (-) Length   445 a.a.
NCBI ID   WP_233848244.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1662463..1673800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS07980 (JDY60_07980) - 1662795..1663964 (-) 1170 WP_200370601.1 pyridoxal phosphate-dependent aminotransferase -
  JDY60_RS07985 (JDY60_07985) - 1664116..1665126 (+) 1011 WP_200370603.1 YeiH family protein -
  JDY60_RS07990 (JDY60_07990) - 1665155..1665592 (-) 438 WP_049538209.1 CoA-binding protein -
  JDY60_RS07995 (JDY60_07995) - 1665713..1666681 (-) 969 WP_000010175.1 ribose-phosphate diphosphokinase -
  JDY60_RS08000 (JDY60_08000) - 1666896..1667390 (-) 495 WP_025170864.1 carbonic anhydrase -
  JDY60_RS08005 (JDY60_08005) radA 1667463..1668800 (-) 1338 WP_233848244.1 DNA repair protein RadA Machinery gene
  JDY60_RS08010 (JDY60_08010) - 1668838..1669395 (-) 558 WP_000752155.1 histidine phosphatase family protein -
  JDY60_RS08015 (JDY60_08015) - 1669355..1669798 (-) 444 WP_000701977.1 dUTP diphosphatase -
  JDY60_RS08025 (JDY60_08025) tadA 1669989..1670456 (-) 468 WP_001110100.1 tRNA adenosine(34) deaminase TadA -
  JDY60_RS08030 (JDY60_08030) - 1670657..1671943 (-) 1287 WP_125398133.1 adenylosuccinate synthase -
  JDY60_RS09620 comW 1672185..1672421 (-) 237 WP_000939513.1 sigma(X)-activator ComW Regulator

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 48686.00 Da        Isoelectric Point: 5.4058

>NTDB_id=454001 JDY60_RS08005 WP_233848244.1 1667463..1668800(-) (radA) [Streptococcus oralis strain SF100]
MCRNCEYNSPKYLGRCPNCGAWSSFVEEIEVVEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRVLGGGVVPG
SLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRSEVERIQPDFLI
IDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILR
AVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDF
NRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR
INEAAKLGFTKIYVPKNSLTGITPPKEIEVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=454001 JDY60_RS08005 WP_233848244.1 1667463..1668800(-) (radA) [Streptococcus oralis strain SF100]
GTGTGTCGAAATTGTGAATATAATTCACCTAAGTATCTAGGACGTTGTCCCAACTGTGGAGCTTGGTCTTCTTTTGTAGA
AGAAATCGAGGTTGTCGAGGTTAAGAATGCGCGTGTGTCCTTGACGGGTGAGAAAACTAAGCCCATGAAACTGGCTGAGG
TGACTTCAATCAACGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTGCTTGGTGGAGGTGTGGTACCGGGG
AGTCTCGTTCTTATTGGTGGGGATCCAGGGATTGGGAAATCAACCCTTCTCTTACAAGTATCGACTCAGCTGTCCCAAGT
AGGGACTGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTCCGTGCAGAGCGCTTGGGGGATATTGATA
GTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGATCTGAGGTGGAGCGCATCCAACCAGATTTTCTCATC
ATCGACTCTATCCAGACGATTATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGTGTCTCAGGTGCGTGAGGTAACGGC
TGAACTCATGCAGTTGGCGAAGACTAATAACATTGCTATCTTTATCGTAGGACATGTGACTAAGGAAGGAACCTTGGCAG
GTCCGCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGCCACCATACCTTCCGTATTTTGAGG
GCAGTCAAAAACCGTTTTGGTTCCACTAATGAGATTGGCATCTTTGAGATGCAGTCGGGTGGATTGGTTGAGGTCCTCAA
TCCGAGTCAAGTTTTCCTAGAGGAGCGTTTGGATGGGGCTACTGGCTCGTCAATCGTTGTGACCATGGAAGGGACTCGTC
CGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCAACCATGTTTGGAAATGCTAAGCGCACAACGACAGGACTTGATTTC
AATCGTGCAAGTCTGATCATGGCTGTTTTGGAAAAACGAGCAGGGCTTCTCTTGCAAAATCAGGATGCCTATCTCAAATC
TGCTGGTGGCGTGAAATTGGATGAGCCTGCTATTGACTTAGCCGTTGCAGTGGCTATTGCCTCTAGTTACAAGGACAAGC
CTACCAATCCTCAGGAATGTTTTGTGGGTGAACTGGGCTTGACCGGAGAAATTCGGCGCGTGAATCGTATCGAACAACGT
ATCAATGAAGCGGCAAAACTGGGCTTTACCAAGATTTATGTACCCAAGAATTCCTTGACAGGAATCACTCCACCCAAGGA
AATTGAAGTCATTGGTGTGACAACGATTCAAGAAGTTTTGAAAAAGGTCTTTGCATAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-417)

AAA domain (AAA_25)

(55-210)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

98.202

100

0.982
  radA Streptococcus mitis SK321

97.978

100

0.98
  radA Streptococcus pneumoniae Rx1

97.978

100

0.98
  radA Streptococcus pneumoniae D39

97.978

100

0.98
  radA Streptococcus pneumoniae R6

97.978

100

0.98
  radA Streptococcus pneumoniae TIGR4

97.978

100

0.98
  radA/sms Bacillus subtilis subsp. subtilis str. 168

63.371

100

0.634