Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HUN01_RS21910 Genome accession   NZ_CP054698
Coordinates   4607114..4607479 (-) Length   121 a.a.
NCBI ID   WP_069073698.1    Uniprot ID   A0A2D0HCN5
Organism   Nostoc edaphicum CCNP1411     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4602114..4612479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUN01_RS21900 (HUN01_21895) - 4603613..4606555 (-) 2943 WP_181927968.1 methyl-accepting chemotaxis protein -
  HUN01_RS21905 (HUN01_21900) - 4606570..4607100 (-) 531 WP_181927969.1 chemotaxis protein CheW -
  HUN01_RS21910 (HUN01_21905) pilH 4607114..4607479 (-) 366 WP_069073698.1 response regulator transcription factor Machinery gene
  HUN01_RS21915 (HUN01_21910) - 4607724..4608908 (-) 1185 WP_181927970.1 response regulator -
  HUN01_RS21920 (HUN01_21915) hmpF 4609293..4611053 (+) 1761 WP_181927971.1 pilus motility taxis protein HmpF -
  HUN01_RS36220 - 4611151..4611285 (+) 135 WP_257797995.1 hypothetical protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13350.52 Da        Isoelectric Point: 4.8604

>NTDB_id=453977 HUN01_RS21910 WP_069073698.1 4607114..4607479(-) (pilH) [Nostoc edaphicum CCNP1411]
MSTVLIVEDSIAQREMITDLLKATGLTVTHASDGLEALEAIQIAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=453977 HUN01_RS21910 WP_069073698.1 4607114..4607479(-) (pilH) [Nostoc edaphicum CCNP1411]
ATGAGCACAGTTCTGATTGTGGAAGATAGTATCGCGCAAAGGGAGATGATTACAGACCTCCTGAAAGCAACTGGCCTAAC
AGTTACTCATGCCAGTGACGGATTAGAAGCATTGGAGGCAATTCAAATAGCACCTCCAGATTTAGTGGTATTGGATATTG
TCATGCCCCGGATGAACGGCTACGAAGTTTGTCGGCGGTTAAAATCCGATCCAAAAACCCAAAATGTCCCAGTGGTTATG
TGTTCTTCCAAAGGCGAAGAATTTGATCGCTACTGGGGGATGAAACAGGGTGCAGATGCCTACATAGCCAAACCATTTCA
ACCAACCGAGTTGGTAGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D0HCN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372