Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOB47_RS11955 Genome accession   NZ_CP054626
Coordinates   385263..385781 (+) Length   172 a.a.
NCBI ID   WP_174781169.1    Uniprot ID   -
Organism   Cupriavidus gilardii strain FDAARGOS_639     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 380263..390781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB47_RS11945 (FOB47_11945) uvrA 380429..383326 (-) 2898 WP_174781168.1 excinuclease ABC subunit UvrA -
  FOB47_RS11950 (FOB47_11950) - 383801..385078 (+) 1278 WP_053821041.1 MFS transporter -
  FOB47_RS11955 (FOB47_11955) ssb 385263..385781 (+) 519 WP_174781169.1 single-stranded DNA-binding protein Machinery gene
  FOB47_RS11960 (FOB47_11960) - 385999..387216 (+) 1218 WP_174781170.1 acyl-CoA dehydrogenase family protein -
  FOB47_RS11965 (FOB47_11965) - 387246..388586 (+) 1341 WP_174781171.1 LLM class flavin-dependent oxidoreductase -
  FOB47_RS11970 (FOB47_11970) - 388729..390312 (+) 1584 WP_174781172.1 TerC family protein -
  FOB47_RS11975 (FOB47_11975) - 390379..390753 (-) 375 WP_053821046.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18275.02 Da        Isoelectric Point: 5.9518

>NTDB_id=453871 FOB47_RS11955 WP_174781169.1 385263..385781(+) (ssb) [Cupriavidus gilardii strain FDAARGOS_639]
MASVNKVILVGNLGADPETRYMPSGDAVTNIRLATTDRYKDKQSGDMKELTEWHRVAFFGKLAEIAGQYLRKGSQVYIEG
RIRTRKWQDQSGQDKYSTEIVAEQMQMLGSRQGGGGGGDEGGGYARESSGGGYGGGGRGAQGGGGGNQGGGARRPQQSPS
NGFEDMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=453871 FOB47_RS11955 WP_174781169.1 385263..385781(+) (ssb) [Cupriavidus gilardii strain FDAARGOS_639]
ATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCGGACCCCGAAACGCGCTATATGCCCAGTGGCGATGC
CGTGACCAATATCCGGCTGGCCACCACCGACCGCTACAAGGACAAGCAGAGCGGCGACATGAAGGAGCTGACCGAATGGC
ACCGCGTGGCCTTCTTCGGCAAGCTCGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCTCCCAGGTCTATATCGAAGGC
CGCATCCGTACCCGCAAGTGGCAGGACCAGTCGGGCCAGGACAAGTACAGCACCGAAATCGTCGCTGAACAAATGCAGAT
GCTCGGCTCGCGCCAGGGCGGTGGTGGCGGCGGCGACGAAGGCGGCGGCTACGCCCGCGAATCGTCGGGCGGCGGCTATG
GTGGCGGTGGCCGCGGCGCCCAAGGCGGTGGCGGTGGCAACCAGGGCGGCGGCGCACGCCGGCCGCAGCAGTCGCCGTCG
AATGGCTTCGAGGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.933

100

0.558
  ssb Glaesserella parasuis strain SC1401

51.667

100

0.541
  ssb Neisseria gonorrhoeae MS11

45.977

100

0.465
  ssb Neisseria meningitidis MC58

45.402

100

0.459
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.413

100

0.39