Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   I6H74_RS11020 Genome accession   NZ_CP066069
Coordinates   843258..843923 (+) Length   221 a.a.
NCBI ID   WP_065358974.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1017     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 838258..848923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H74_RS04190 (I6H74_04185) - 838316..839716 (+) 1401 WP_046177466.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  I6H74_RS04195 (I6H74_04190) - 839716..840075 (+) 360 WP_003056775.1 S1 RNA-binding domain-containing protein -
  I6H74_RS04200 (I6H74_04195) cysK 840228..841163 (-) 936 WP_003062335.1 cysteine synthase A -
  I6H74_RS04205 (I6H74_04200) - 841267..841905 (-) 639 WP_115256985.1 YigZ family protein -
  I6H74_RS04210 (I6H74_04205) comFA/cflA 841961..843286 (+) 1326 WP_015017291.1 DEAD/DEAH box helicase Machinery gene
  I6H74_RS11020 (I6H74_04210) comFC/cflB 843258..843923 (+) 666 WP_065358974.1 ComF family protein Machinery gene
  I6H74_RS04220 (I6H74_04215) raiA 844003..844551 (+) 549 WP_003061817.1 ribosome-associated translation inhibitor RaiA -
  I6H74_RS04225 (I6H74_04220) - 844681..845661 (+) 981 WP_115257105.1 IS30 family transposase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25363.40 Da        Isoelectric Point: 8.8583

>NTDB_id=453606 I6H74_RS11020 WP_065358974.1 843258..843923(+) (comFC/cflB) [Streptococcus dysgalactiae strain FDAARGOS_1017]
MICLLCQQFSPLPLRITDILFLKPQTTTLCQECQQGFQKISFTSCQTCNAPSQSSPCSDCLEWKVKGYEVNHKSLYQYNA
AMKAYFSQYKFQGDYLLRHVFAQELAQVIKKDYPNFTPVPVPISKERYEERHFNQVTAILEAGNINYCMLFKRMDTSRQS
SKTKNERLLSKDAYRLSTLSELPAKILIIDDIYTTGSTIIALKKLLMHVGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=453606 I6H74_RS11020 WP_065358974.1 843258..843923(+) (comFC/cflB) [Streptococcus dysgalactiae strain FDAARGOS_1017]
ATGATATGCCTCCTATGTCAACAATTTAGTCCATTACCCTTGCGAATAACGGATATTCTCTTTTTGAAACCTCAAACAAC
AACTCTCTGTCAGGAGTGTCAACAAGGGTTTCAAAAGATAAGCTTCACGAGTTGCCAAACCTGTAACGCTCCTTCCCAAA
GCTCTCCATGTTCTGATTGTTTAGAATGGAAAGTCAAAGGATACGAGGTTAATCACAAAAGTTTATATCAGTATAACGCT
GCTATGAAAGCTTATTTTAGCCAATATAAGTTTCAAGGAGACTACTTGCTAAGACATGTCTTTGCTCAAGAATTAGCCCA
AGTTATTAAAAAAGACTATCCAAATTTTACTCCTGTTCCAGTTCCTATCAGTAAGGAGCGTTATGAAGAACGTCATTTCA
ATCAAGTGACTGCTATACTTGAAGCAGGGAATATTAACTATTGCATGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCT
TCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTATCGTCTCTCCACCCTCTCTGAATTACCAGCAAAAATCCT
CATTATTGATGATATTTACACTACCGGTAGCACCATTATCGCTTTGAAAAAACTATTAATGCATGTTGGAAATAGTGACA
TCAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae D39

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae R6

40.271

100

0.403