Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   FOC67_RS01700 Genome accession   NZ_CP054572
Coordinates   366552..367109 (-) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas sp. FDAARGOS_761     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 361552..372109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC67_RS01685 (FOC67_01685) pilY1 361650..365135 (-) 3486 WP_009316264.1 type 4a pilus biogenesis protein PilY1 -
  FOC67_RS01690 (FOC67_01690) pilX 365147..365734 (-) 588 WP_009316265.1 type 4a pilus minor pilin PilX -
  FOC67_RS01695 (FOC67_01695) pilW 365731..366555 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  FOC67_RS01700 (FOC67_01700) pilV 366552..367109 (-) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  FOC67_RS01705 (FOC67_01705) - 367100..367606 (-) 507 WP_003094696.1 Tfp pilus assembly protein FimT/FimU -
  FOC67_RS01710 (FOC67_01710) - 367712..368221 (-) 510 WP_009316266.1 Tfp pilus assembly protein FimT/FimU -
  FOC67_RS01715 (FOC67_01715) thiO 368356..369450 (+) 1095 WP_009316267.1 glycine oxidase ThiO -
  FOC67_RS01720 (FOC67_01720) pilR 369496..370833 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=453551 FOC67_RS01700 WP_003094697.1 366552..367109(-) (pilV) [Pseudomonas sp. FDAARGOS_761]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=453551 FOC67_RS01700 WP_003094697.1 366552..367109(-) (pilV) [Pseudomonas sp. FDAARGOS_761]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978