Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOC67_RS27440 Genome accession   NZ_CP054572
Coordinates   5890723..5892216 (-) Length   497 a.a.
NCBI ID   WP_009314511.1    Uniprot ID   A0A6N0KV96
Organism   Pseudomonas sp. FDAARGOS_761     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5885723..5897216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC67_RS27425 (FOC67_27425) - 5886454..5887371 (+) 918 WP_003141986.1 LysR substrate-binding domain-containing protein -
  FOC67_RS27430 (FOC67_27430) pchP 5887522..5888571 (+) 1050 WP_009314512.1 phosphorylcholine phosphatase -
  FOC67_RS27435 (FOC67_27435) betT 5888613..5890598 (-) 1986 WP_003096496.1 choline BCCT transporter BetT -
  FOC67_RS27440 (FOC67_27440) comM 5890723..5892216 (-) 1494 WP_009314511.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOC67_RS27445 (FOC67_27445) - 5892257..5892517 (-) 261 WP_003096478.1 accessory factor UbiK family protein -
  FOC67_RS27450 (FOC67_27450) glnK 5892957..5893295 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  FOC67_RS27455 (FOC67_27455) - 5893335..5894663 (+) 1329 WP_003109815.1 ammonium transporter -
  FOC67_RS27460 (FOC67_27460) - 5894924..5895349 (+) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FOC67_RS27465 (FOC67_27465) sutA 5895427..5895744 (+) 318 WP_003096440.1 transcriptional regulator SutA -
  FOC67_RS27470 (FOC67_27470) - 5896181..5897095 (+) 915 WP_009314507.1 fimbrial protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53079.03 Da        Isoelectric Point: 7.9587

>NTDB_id=453581 FOC67_RS27440 WP_009314511.1 5890723..5892216(-) (comM) [Pseudomonas sp. FDAARGOS_761]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLLPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEISERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRAPTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=453581 FOC67_RS27440 WP_009314511.1 5890723..5892216(-) (comM) [Pseudomonas sp. FDAARGOS_761]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
TGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCTGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCAGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCTCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTAGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGATCAGCGAACGGGTTGGCGCAGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGACCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCACCGACCTCCACGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KV96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.452

99.799

0.563
  comM Haemophilus influenzae Rd KW20

55.467

100

0.561
  comM Vibrio cholerae strain A1552

56.048

99.799

0.559
  comM Glaesserella parasuis strain SC1401

54.691

100

0.551
  comM Legionella pneumophila str. Paris

49.901

100

0.507
  comM Legionella pneumophila strain ERS1305867

49.901

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.154

100

0.471