Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I6H74_RS02070 Genome accession   NZ_CP066069
Coordinates   388599..389192 (+) Length   197 a.a.
NCBI ID   WP_022555247.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 383599..394192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H74_RS02060 (I6H74_02055) hexB 385384..387366 (+) 1983 WP_046177146.1 DNA mismatch repair endonuclease MutL Machinery gene
  I6H74_RS02065 (I6H74_02060) - 387377..388597 (+) 1221 WP_003058727.1 MFS transporter -
  I6H74_RS02070 (I6H74_02065) ruvA 388599..389192 (+) 594 WP_022555247.1 Holliday junction branch migration protein RuvA Machinery gene
  I6H74_RS02075 (I6H74_02070) - 389202..389774 (+) 573 WP_115257071.1 DNA-3-methyladenine glycosylase I -
  I6H74_RS02080 (I6H74_02075) - 389777..390109 (+) 333 WP_115257070.1 VOC family protein -
  I6H74_RS02085 (I6H74_02080) - 390189..391007 (+) 819 Protein_359 ISAs1-like element IS1548 family transposase -
  I6H74_RS02090 (I6H74_02085) cinA 391207..392478 (+) 1272 WP_046177922.1 competence/damage-inducible protein A Machinery gene
  I6H74_RS02095 (I6H74_02090) recA 392583..393719 (+) 1137 WP_003058758.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21711.97 Da        Isoelectric Point: 5.7322

>NTDB_id=453526 I6H74_RS02070 WP_022555247.1 388599..389192(+) (ruvA) [Streptococcus dysgalactiae strain FDAARGOS_1017]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKTAQQMVLDLAGKFVEVPQETSKAKPSTSSNNDQLDEAIEALL
ALGYKAAELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=453526 I6H74_RS02070 WP_022555247.1 388599..389192(+) (ruvA) [Streptococcus dysgalactiae strain FDAARGOS_1017]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATCAATGTAGCAAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGCATT
GGTCCGACAACAGCTCTCGCTATTGTGGCAGTTGATGATAATCAGGGGCTTGTTAATGCCATTGATACCAGTGACATCAA
ATACTTGACTAAATTTCCTAAAATCGGGAAAAAAACGGCACAACAGATGGTTCTTGACTTAGCCGGAAAATTTGTGGAGG
TTCCACAAGAGACCAGTAAAGCAAAACCGTCTACCTCCTCAAACAATGACCAGTTGGATGAGGCTATTGAAGCCCTTCTT
GCCCTAGGTTATAAAGCAGCAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATACAT
CAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(150-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

67.513

100

0.675
  ruvA Streptococcus pneumoniae R6

67.513

100

0.675
  ruvA Streptococcus pneumoniae D39

67.513

100

0.675
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.406