Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I6H74_RS02090 Genome accession   NZ_CP066069
Coordinates   391207..392478 (+) Length   423 a.a.
NCBI ID   WP_046177922.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1017     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 386207..397478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H74_RS02065 (I6H74_02060) - 387377..388597 (+) 1221 WP_003058727.1 MFS transporter -
  I6H74_RS02070 (I6H74_02065) ruvA 388599..389192 (+) 594 WP_022555247.1 Holliday junction branch migration protein RuvA Machinery gene
  I6H74_RS02075 (I6H74_02070) - 389202..389774 (+) 573 WP_115257071.1 DNA-3-methyladenine glycosylase I -
  I6H74_RS02080 (I6H74_02075) - 389777..390109 (+) 333 WP_115257070.1 VOC family protein -
  I6H74_RS02085 (I6H74_02080) - 390189..391007 (+) 819 Protein_359 ISAs1-like element IS1548 family transposase -
  I6H74_RS02090 (I6H74_02085) cinA 391207..392478 (+) 1272 WP_046177922.1 competence/damage-inducible protein A Machinery gene
  I6H74_RS02095 (I6H74_02090) recA 392583..393719 (+) 1137 WP_003058758.1 recombinase RecA Machinery gene
  I6H74_RS02100 (I6H74_02095) spx 394013..394411 (+) 399 WP_003053105.1 transcriptional regulator Spx -
  I6H74_RS02105 (I6H74_02100) - 394523..394792 (+) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  I6H74_RS02110 (I6H74_02105) ruvX 394789..395208 (+) 420 WP_003053103.1 Holliday junction resolvase RuvX -
  I6H74_RS02115 (I6H74_02110) - 395219..395524 (+) 306 WP_003058733.1 DUF1292 domain-containing protein -
  I6H74_RS02120 (I6H74_02115) - 395861..397423 (+) 1563 WP_115257069.1 DUF2079 domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45997.37 Da        Isoelectric Point: 4.7637

>NTDB_id=453527 I6H74_RS02090 WP_046177922.1 391207..392478(+) (cinA) [Streptococcus dysgalactiae strain FDAARGOS_1017]
MKAELITVGTEILTGQIVNTNAQFLSEKMAELGIDVYFQTAVGDNEERLLSVIATASQRSDLVILCGGLGPTEDDLTKQT
LAKYLNRDLVFEEQASQKLDAFYASRKESSRTANNAKQAQIIAGSSPLQNRTGLAVGGLITVNEVTYVVLPGPPSELKPM
VNEELLPFLSTQSRKLYSRVLRFFGIGESQLVTVLSDLIENQTDPTIAPYAKTGEVTLRLSTKAENQTLADTKLDSLEAQ
LLSRKTPDNQSLSDFLYGYREDNSLAREVFELLVKYDKTITAAESLTAGLFQSTLASFSGASQVFNGGFVTYSMEEKARM
LGIPLEDLISHGVVSAYTAEKMAEQARLLTGADIGVSLTGVAGPDMLEEQPAGTVFIGLATQNKVESIKVLISGRSRSDV
RHIATLHAFNMVRKTLLKPENLL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=453527 I6H74_RS02090 WP_046177922.1 391207..392478(+) (cinA) [Streptococcus dysgalactiae strain FDAARGOS_1017]
ATGAAAGCTGAACTGATTACAGTAGGTACCGAAATTTTGACTGGTCAAATTGTGAATACCAATGCTCAATTTCTGTCGGA
AAAAATGGCAGAGCTAGGTATTGATGTCTATTTTCAAACGGCTGTTGGGGATAACGAGGAGCGTTTACTTTCAGTGATTG
CAACTGCTAGTCAGCGGAGTGATTTGGTCATTTTATGCGGTGGTCTTGGCCCCACGGAAGATGATTTAACCAAGCAGACT
TTAGCAAAATATCTTAATAGAGATTTGGTCTTTGAAGAACAAGCTAGTCAAAAATTGGACGCTTTTTATGCTAGTCGTAA
AGAGTCGTCTCGAACGGCAAATAATGCTAAGCAGGCTCAAATCATTGCTGGTTCAAGCCCTCTGCAAAATAGAACAGGAC
TTGCAGTGGGTGGCTTAATCACTGTTAATGAGGTGACTTATGTTGTTTTACCCGGGCCGCCAAGTGAATTAAAACCTATG
GTTAATGAGGAACTGCTTCCTTTTTTGTCCACACAATCTCGCAAACTTTATTCGAGAGTTTTACGATTTTTTGGGATTGG
TGAGAGTCAGCTGGTGACGGTCTTATCAGACCTTATTGAGAATCAAACTGATCCTACTATTGCACCTTATGCCAAAACTG
GTGAAGTGACCCTTCGTTTATCAACGAAAGCTGAAAATCAAACATTAGCAGATACGAAATTAGATTCACTAGAAGCGCAG
CTATTGTCGCGAAAAACTCCTGACAACCAGTCGTTATCAGATTTTCTTTATGGCTATAGGGAGGATAATTCCTTAGCGCG
TGAGGTATTTGAGCTCTTAGTAAAATATGATAAGACAATTACTGCAGCAGAAAGTCTAACCGCGGGATTATTTCAGTCAA
CTTTGGCGAGTTTTTCAGGAGCTTCTCAAGTATTCAATGGAGGCTTTGTGACTTATAGCATGGAAGAAAAAGCGAGAATG
CTAGGCATTCCTTTAGAGGATTTGATATCGCATGGAGTTGTTAGTGCTTATACGGCCGAGAAGATGGCGGAGCAAGCAAG
GTTATTGACTGGTGCTGATATTGGGGTAAGTTTAACAGGTGTTGCCGGACCAGATATGTTGGAGGAACAGCCTGCAGGTA
CAGTTTTCATTGGCCTTGCCACTCAAAATAAGGTAGAATCAATAAAGGTTTTGATTAGCGGGCGAAGCCGTTCAGATGTG
CGTCATATTGCGACTTTACATGCTTTTAATATGGTCCGTAAAACTTTATTAAAACCTGAAAATTTGCTATAA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Competence-damaged protein (CinA)

(263-416)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

72.577

100

0.726
  cinA Streptococcus mitis SK321

70.983

98.582

0.7
  cinA Streptococcus mitis NCTC 12261

70.024

98.582

0.69
  cinA Streptococcus pneumoniae TIGR4

69.784

98.582

0.688
  cinA Streptococcus pneumoniae R36A

69.784

98.582

0.688
  cinA Streptococcus pneumoniae Rx1

69.784

98.582

0.688
  cinA Streptococcus pneumoniae R6

69.784

98.582

0.688
  cinA Streptococcus pneumoniae D39

69.544

98.582

0.686
  cinA Streptococcus suis isolate S10

52.644

98.345

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

45.455

98.818

0.449