Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOC81_RS17450 Genome accession   NZ_CP054569
Coordinates   3725664..3727190 (-) Length   508 a.a.
NCBI ID   WP_174716668.1    Uniprot ID   -
Organism   Achromobacter denitrificans strain FDAARGOS_787     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3720664..3732190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC81_RS17425 (FOC81_17425) - 3720827..3721168 (-) 342 WP_087881462.1 integration host factor subunit alpha -
  FOC81_RS17430 (FOC81_17430) pheT 3721172..3723589 (-) 2418 WP_174716667.1 phenylalanine--tRNA ligase subunit beta -
  FOC81_RS17435 (FOC81_17435) pheS 3723603..3724625 (-) 1023 WP_062680692.1 phenylalanine--tRNA ligase subunit alpha -
  FOC81_RS17440 (FOC81_17440) rplT 3724703..3725062 (-) 360 WP_006218741.1 50S ribosomal protein L20 -
  FOC81_RS17445 (FOC81_17445) rpmI 3725078..3725275 (-) 198 WP_006218740.1 50S ribosomal protein L35 -
  FOC81_RS17450 (FOC81_17450) comM 3725664..3727190 (-) 1527 WP_174716668.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOC81_RS17455 (FOC81_17455) - 3727362..3727613 (-) 252 WP_043545227.1 accessory factor UbiK family protein -
  FOC81_RS17460 (FOC81_17460) - 3727800..3728735 (-) 936 WP_174716669.1 alpha/beta fold hydrolase -
  FOC81_RS17465 (FOC81_17465) - 3728830..3729411 (+) 582 WP_174716670.1 CGNR zinc finger domain-containing protein -
  FOC81_RS17470 (FOC81_17470) - 3729422..3730384 (-) 963 WP_174716671.1 zinc-dependent alcohol dehydrogenase family protein -
  FOC81_RS17475 (FOC81_17475) - 3730448..3730750 (-) 303 WP_062680702.1 ArsR/SmtB family transcription factor -
  FOC81_RS17480 (FOC81_17480) - 3731425..3731763 (+) 339 WP_043545226.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 53018.16 Da        Isoelectric Point: 8.7965

>NTDB_id=453462 FOC81_RS17450 WP_174716668.1 3725664..3727190(-) (comM) [Achromobacter denitrificans strain FDAARGOS_787]
MTLAVLASRALCGLDTHAVRVETHLGPGLPGFNVVGLPDTEVRESRERVRAAILNSGFEFPPGRITVNLSPADLPKESGR
FDLPIALGVLLASGQLAAQAERAPDARAPAPALADLVLAGELSLTGALVPVAAPLVIALGVAREAPGATLILPAGSAEQA
AWVPDLRVLSARSLADVAAHAAGACRLPDAIPRPWPAAPPAACLSDVRGQPGARRALEVAAAGAHSLLMIGPPGAGKSML
AARLPGLLPPLARREALEAAAVAALAGLPDAPMGQPPFRAPHHSASVAALVGGGSRPRPGEISLAHRGVLFLDELPEFNR
RTLEALREPLEAGRVVIARALHSARFPARFQLVAAMNPCPCGWRGHPARACACSPDQAARYVGRVSGPLLDRIDLHVALP
PSDPDWMSGPPGEPSEPVRERVARCRERQLARQGKPNAALEGAELDEHCRMDGEARALLSQAMRRLAGSARALHRALRVA
RTIADLDGEERLAASHVAQAVQYRRPGV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=453462 FOC81_RS17450 WP_174716668.1 3725664..3727190(-) (comM) [Achromobacter denitrificans strain FDAARGOS_787]
TTGACGCTAGCCGTTCTAGCCAGCCGTGCCCTTTGCGGCCTGGACACCCACGCGGTGCGCGTGGAGACGCATCTGGGGCC
CGGGCTGCCCGGCTTCAACGTGGTGGGCTTGCCGGACACCGAGGTGCGCGAGAGCCGCGAGCGAGTGCGTGCCGCCATCC
TCAATAGCGGCTTCGAATTTCCGCCGGGCCGCATCACCGTCAATCTCTCGCCGGCCGACCTCCCCAAGGAGTCCGGCCGC
TTCGACCTGCCCATCGCCCTGGGCGTGTTGCTGGCGTCGGGGCAATTGGCCGCCCAGGCGGAGCGCGCCCCGGATGCGCG
CGCGCCGGCTCCGGCGCTGGCCGACCTGGTGCTGGCCGGCGAGCTGTCGTTGACGGGGGCGCTGGTGCCGGTGGCCGCGC
CGCTGGTCATCGCGCTGGGCGTGGCGCGCGAGGCGCCTGGCGCCACGCTCATCCTGCCGGCCGGCAGCGCCGAGCAGGCG
GCCTGGGTGCCGGACCTGCGGGTGTTGTCCGCGCGCAGTCTGGCCGACGTGGCCGCGCACGCGGCCGGAGCCTGCCGGCT
GCCCGATGCCATTCCCAGGCCCTGGCCGGCGGCGCCGCCGGCGGCGTGCCTGTCGGACGTGCGCGGCCAGCCGGGGGCGC
GGCGGGCGCTGGAGGTCGCGGCGGCGGGAGCGCACAGCCTGCTGATGATCGGTCCGCCGGGCGCGGGCAAGAGCATGCTG
GCCGCGCGCCTGCCGGGCTTGCTGCCGCCCCTGGCGCGGCGGGAGGCGCTGGAAGCCGCTGCGGTGGCGGCCCTGGCGGG
CCTGCCCGACGCGCCGATGGGGCAGCCGCCGTTCCGGGCGCCGCACCATTCCGCGTCCGTCGCGGCGCTGGTGGGCGGGG
GCAGCCGGCCGCGCCCGGGCGAAATCAGTCTGGCGCATCGAGGGGTGCTGTTCCTGGACGAGCTGCCGGAATTCAACCGC
CGAACGCTCGAAGCTTTGCGCGAACCGCTGGAAGCGGGCAGGGTGGTCATCGCCCGGGCGCTGCATTCGGCGCGGTTCCC
CGCCCGGTTCCAGCTGGTCGCGGCCATGAACCCATGCCCTTGCGGCTGGCGCGGCCATCCGGCCAGGGCCTGCGCCTGCT
CTCCCGACCAGGCGGCGCGCTATGTGGGCAGGGTGTCCGGCCCCTTGCTGGATCGCATCGATCTGCACGTGGCCCTGCCG
CCCTCCGACCCGGATTGGATGAGCGGCCCGCCGGGCGAGCCCTCGGAGCCCGTGCGCGAGCGCGTGGCGCGTTGCCGCGA
GCGCCAACTGGCCCGCCAGGGCAAGCCGAACGCCGCCCTGGAGGGCGCTGAACTGGACGAGCATTGCCGCATGGATGGCG
AGGCCCGGGCCCTGCTGTCGCAGGCCATGCGCCGGCTGGCCGGGTCGGCCCGGGCCCTGCACCGGGCGCTGCGGGTTGCC
CGGACTATTGCCGACCTGGACGGCGAGGAGCGGCTGGCGGCGTCCCACGTCGCCCAGGCCGTGCAATACCGGCGGCCGGG
AGTATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-402)

Subunit ChlI of Mg-chelatase (ChlI)

(21-154)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.828

100

0.492
  comM Vibrio campbellii strain DS40M4

47.843

100

0.48
  comM Haemophilus influenzae Rd KW20

47.082

100

0.476
  comM Glaesserella parasuis strain SC1401

44.961

100

0.457
  comM Legionella pneumophila str. Paris

44.227

100

0.445
  comM Legionella pneumophila strain ERS1305867

44.227

100

0.445
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.166

100

0.429