Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6H72_RS04305 Genome accession   NZ_CP066055
Coordinates   873241..873843 (+) Length   200 a.a.
NCBI ID   WP_198458360.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 868241..878843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS04275 (I6H72_04275) ahpC 868458..869024 (-) 567 WP_003036466.1 alkyl hydroperoxide reductase subunit C -
  I6H72_RS04280 (I6H72_04280) - 869127..870629 (-) 1503 WP_198458357.1 cell division site-positioning protein MapZ family protein -
  I6H72_RS04285 (I6H72_04285) - 870642..871796 (-) 1155 WP_198458358.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  I6H72_RS04295 (I6H72_04295) gpsB 872233..872574 (-) 342 WP_003036439.1 cell division regulator GpsB -
  I6H72_RS04300 (I6H72_04300) - 872644..873171 (-) 528 WP_198458359.1 DUF1273 domain-containing protein -
  I6H72_RS04305 (I6H72_04305) recU 873241..873843 (+) 603 WP_198458360.1 Holliday junction resolvase RecU Machinery gene
  I6H72_RS04310 (I6H72_04310) pbp1a 873836..876001 (+) 2166 WP_198458361.1 penicillin-binding protein PBP1A -
  I6H72_RS04315 (I6H72_04315) pepC 876191..877528 (-) 1338 WP_198458362.1 aminopeptidase C -
  I6H72_RS04320 (I6H72_04320) nadE 877676..878500 (-) 825 WP_198458363.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23157.91 Da        Isoelectric Point: 10.1006

>NTDB_id=453322 I6H72_RS04305 WP_198458360.1 873241..873843(+) (recU) [Streptococcus constellatus strain FDAARGOS_1015]
MVNYPHKVPSRNSLRLPKKKSVDFANRGMSFEKMINETNDYYLSHDLAVIHKKPTPIQIVKVDYPRRSRVKIVEAYFRQA
STTDYSGVYQGHYIDFEAKETHQKASMPMKNFHAHQIKHMEQVVKQGGICFVLLHFSALKLTYLLPAPYLINFFKIDKGK
KSMPLDYIQKHGYSISQNGLPSIPYLEIIQQNLLGGKINE

Nucleotide


Download         Length: 603 bp        

>NTDB_id=453322 I6H72_RS04305 WP_198458360.1 873241..873843(+) (recU) [Streptococcus constellatus strain FDAARGOS_1015]
ATGGTCAACTATCCACATAAAGTTCCCTCTCGAAATTCATTAAGACTTCCCAAAAAGAAGTCCGTTGACTTTGCGAATCG
GGGAATGTCGTTTGAAAAAATGATCAATGAAACGAATGATTATTATCTTAGTCACGATTTAGCGGTCATTCACAAGAAAC
CAACCCCTATTCAGATTGTAAAAGTGGATTATCCCAGACGTAGTCGGGTAAAAATTGTTGAAGCCTACTTTCGACAAGCC
TCTACAACAGACTATTCTGGTGTCTATCAAGGACATTATATAGATTTTGAAGCAAAAGAAACACATCAAAAGGCTTCCAT
GCCGATGAAAAATTTTCATGCTCATCAAATCAAGCACATGGAACAAGTCGTCAAACAAGGAGGAATTTGTTTCGTTTTAT
TGCACTTTTCAGCCTTAAAATTGACATATCTGCTTCCTGCTCCTTATTTAATTAACTTCTTCAAGATTGACAAGGGGAAA
AAGTCCATGCCACTTGACTACATTCAAAAGCATGGATATTCTATCTCACAGAATGGTCTTCCTAGCATTCCGTATCTTGA
AATCATTCAACAAAATTTACTAGGTGGTAAAATAAATGAATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.249

100

0.505