NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	HUF98_RS18200	Genome accession	NZ_CP054560
Coordinates	3769832..3771319 (+)	Length	495 a.a.
NCBI ID	WP_140952779.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain YC103
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 3764832..3776319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUF98_RS18175 (HUF98_18095)	ribD	3765748..3766833 (-)	1086	WP_001292524.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	-
HUF98_RS18180 (HUF98_18100)	nrdR	3766849..3767307 (-)	459	WP_000543541.1	transcriptional regulator NrdR	-
HUF98_RS18185 (HUF98_18105)	-	3767466..3768863 (-)	1398	WP_000738520.1	ammonium transporter	-
HUF98_RS18190 (HUF98_18110)	glnK	3768921..3769259 (-)	339	WP_000780326.1	P-II family nitrogen regulator	-
HUF98_RS18195 (HUF98_18115)	-	3769539..3769766 (+)	228	WP_000894500.1	accessory factor UbiK family protein	-
HUF98_RS18200 (HUF98_18120)	comM	3769832..3771319 (+)	1488	WP_140952779.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
HUF98_RS18205 (HUF98_18125)	-	3771334..3772767 (-)	1434	WP_005112471.1	PLP-dependent aminotransferase family protein	-
HUF98_RS18210 (HUF98_18130)	-	3772879..3773655 (+)	777	WP_000845026.1	aldolase	-
HUF98_RS18215 (HUF98_18135)	-	3773671..3774549 (+)	879	WP_000772972.1	dihydrodipicolinate synthase family protein	-
HUF98_RS18220 (HUF98_18140)	-	3774592..3775413 (-)	822	WP_000975215.1	TorF family putative porin	-
HUF98_RS18225 (HUF98_18145)	-	3775470..3775640 (-)	171	WP_171519573.1	hypothetical protein	-

Sequence

Protein

Download Length: 495 a.a. Molecular weight: 54527.41 Da Isoelectric Point: 7.2753

                                >NTDB_id=453322 HUF98_RS18200 WP_140952779.1 3769832..3771319(+) (comM) [Acinetobacter baumannii strain YC103]

MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR

LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL

KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST

QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGSSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE

IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE

DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ

SPHLTEALSYRGNHS

Nucleotide

Download Length: 1488 bp

                                >NTDB_id=453322 HUF98_RS18200 WP_140952779.1 3769832..3771319(+) (comM) [Acinetobacter baumannii strain YC103]

ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA

AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCTGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA

TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG

CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT

TGGAGAGTTGGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC

ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTACCCGGTTAATCATTTA

AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGCCCATTCAAATGAAATGCCCTA

TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC

TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT

CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC

CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCAGTTCACACCCTAAACCAGGTGAAATTACTTTATCTCATTTAG

GTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA

ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCTGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG

TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAACCGTATATCGGGAC

CGTTACTCGATCGTATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA

GATTCTACCACTGTACGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT

CTCACCCAAACAACTGGAACAACATGCTGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA

ATTTATCTGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCCCAAAGTGAGGTCATTCAA

AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	51.008	100	0.511
comM	Glaesserella parasuis strain SC1401	50.1	100	0.505
comM	Haemophilus influenzae Rd KW20	49.299	100	0.497
comM	Legionella pneumophila strain ERS1305867	48.996	100	0.493
comM	Legionella pneumophila str. Paris	48.996	100	0.493
comM	Vibrio campbellii strain DS40M4	48.283	100	0.483
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.4	100	0.469

Detailed information NTG0453322