Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   I6H72_RS04050 Genome accession   NZ_CP066055
Coordinates   823715..824389 (+) Length   224 a.a.
NCBI ID   WP_020997643.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 818715..829389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS04025 (I6H72_04025) - 820236..820679 (+) 444 WP_198458341.1 RNA polymerase sigma factor -
  I6H72_RS04030 (I6H72_04030) - 820660..820911 (+) 252 WP_006267285.1 helix-turn-helix domain-containing protein -
  I6H72_RS04035 (I6H72_04035) - 821351..821554 (+) 204 WP_048801117.1 excisionase -
  I6H72_RS04040 (I6H72_04040) - 821630..822820 (+) 1191 WP_198458342.1 site-specific integrase -
  I6H72_RS04045 (I6H72_04045) - 823037..823564 (-) 528 WP_006267546.1 Dps family protein -
  I6H72_RS04050 (I6H72_04050) cclA/cilC 823715..824389 (+) 675 WP_020997643.1 prepilin peptidase Machinery gene
  I6H72_RS04055 (I6H72_04055) - 824384..824902 (-) 519 WP_003070167.1 VanZ family protein -
  I6H72_RS04060 (I6H72_04060) rlmN 824895..825977 (-) 1083 WP_049476508.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  I6H72_RS04065 (I6H72_04065) - 826011..826568 (-) 558 WP_003070172.1 YutD family protein -
  I6H72_RS04070 (I6H72_04070) sepM 826855..827910 (-) 1056 WP_070669255.1 SepM family pheromone-processing serine protease Regulator
  I6H72_RS04075 (I6H72_04075) coaD 827891..828388 (-) 498 WP_006267255.1 pantetheine-phosphate adenylyltransferase -
  I6H72_RS04080 (I6H72_04080) rsmD 828378..828917 (-) 540 WP_020997641.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence


Protein


Download         Length: 224 a.a.        Molecular weight: 25312.66 Da        Isoelectric Point: 8.5004

>NTDB_id=453313 I6H72_RS04050 WP_020997643.1 823715..824389(+) (cclA/cilC) [Streptococcus constellatus strain FDAARGOS_1015]
MIHFYFFLVGSIVASFLGLVVDRFPEQSIITPASHCNVCRQKLAPRDLIPVLSQLINRLRCRFCNSKIPIRYILLELTGG
CLFLATSLGYLNINRLVLLAMGMTLSLYDQREQEYPLLIWLIFHIFLLFLTSFNLLMVAFLALGILTHFVDLRIGAGDFL
FLASCSTIFHLTEVLLIIQIASIIGLLLFGLKSKKDRLAFVPCLFCGGSILIMIQFIVLHQNAL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=453313 I6H72_RS04050 WP_020997643.1 823715..824389(+) (cclA/cilC) [Streptococcus constellatus strain FDAARGOS_1015]
ATGATTCATTTTTATTTTTTCTTGGTTGGAAGTATTGTAGCTTCCTTTTTAGGACTGGTCGTTGATCGCTTTCCTGAGCA
GTCTATTATCACACCTGCTAGTCATTGCAACGTTTGTAGACAGAAATTAGCACCTCGTGATTTAATTCCTGTTCTTTCAC
AGCTTATCAATCGGCTGCGTTGCCGTTTTTGCAACTCAAAAATTCCCATCCGTTACATCCTTCTAGAACTAACTGGTGGC
TGTCTCTTTCTTGCAACATCTTTAGGTTATCTAAACATCAACCGGCTCGTTTTGCTTGCAATGGGAATGACCTTATCCCT
TTATGATCAAAGAGAACAAGAATATCCTCTCCTCATCTGGTTAATCTTCCATATTTTTCTCCTTTTTTTGACAAGCTTCA
ATCTTTTAATGGTTGCTTTTTTAGCACTTGGGATTTTGACTCACTTCGTTGATTTACGTATCGGTGCAGGAGACTTTCTT
TTTCTGGCATCTTGCTCAACTATTTTTCATCTGACTGAAGTTCTTCTCATTATTCAAATTGCTAGTATCATTGGTCTGCT
CCTTTTTGGTTTAAAATCAAAAAAAGACAGGTTAGCCTTTGTTCCCTGTCTTTTCTGTGGTGGCAGCATCCTGATAATGA
TACAATTTATCGTTCTTCACCAAAATGCCTTATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

58.019

94.643

0.549

  cclA/cilC Streptococcus mitis NCTC 12261

57.547

94.643

0.545

  cclA/cilC Streptococcus pneumoniae TIGR4

57.075

94.643

0.54

  cclA/cilC Streptococcus pneumoniae Rx1

56.604

94.643

0.536

  cclA/cilC Streptococcus pneumoniae D39

56.604

94.643

0.536

  cclA/cilC Streptococcus pneumoniae R6

56.604

94.643

0.536