Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   HUF98_RS01535 Genome accession   NZ_CP054560
Coordinates   324667..325407 (+) Length   246 a.a.
NCBI ID   WP_000076106.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain YC103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 319667..330407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS01520 (HUF98_01520) ponA 320254..322809 (-) 2556 WP_064191519.1 penicillin-binding protein PBP1a -
  HUF98_RS01525 (HUF98_01525) pilM 322971..324029 (+) 1059 WP_031951026.1 pilus assembly protein PilM Machinery gene
  HUF98_RS01530 (HUF98_01530) pilN 324029..324670 (+) 642 WP_140951736.1 PilN domain-containing protein Machinery gene
  HUF98_RS01535 (HUF98_01535) pilO 324667..325407 (+) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  HUF98_RS01540 (HUF98_01540) pilP 325418..325945 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  HUF98_RS01545 (HUF98_01545) pilQ 326008..328173 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  HUF98_RS01550 (HUF98_01550) aroK 328185..328754 (+) 570 WP_000643712.1 shikimate kinase AroK -
  HUF98_RS01555 (HUF98_01555) aroB 328783..329865 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27805.56 Da        Isoelectric Point: 4.8357

>NTDB_id=453284 HUF98_RS01535 WP_000076106.1 324667..325407(+) (pilO) [Acinetobacter baumannii strain YC103]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWVFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=453284 HUF98_RS01535 WP_000076106.1 324667..325407(+) (pilO) [Acinetobacter baumannii strain YC103]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGGTTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679