Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HUF98_RS01530 Genome accession   NZ_CP054560
Coordinates   324029..324670 (+) Length   213 a.a.
NCBI ID   WP_140951736.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain YC103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 319029..329670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS01510 (HUF98_01510) - 319077..319409 (+) 333 WP_000169602.1 DUF7709 family protein -
  HUF98_RS01515 (HUF98_01515) - 319412..320236 (+) 825 WP_005130721.1 putative RNA methyltransferase -
  HUF98_RS01520 (HUF98_01520) ponA 320254..322809 (-) 2556 WP_064191519.1 penicillin-binding protein PBP1a -
  HUF98_RS01525 (HUF98_01525) pilM 322971..324029 (+) 1059 WP_031951026.1 pilus assembly protein PilM Machinery gene
  HUF98_RS01530 (HUF98_01530) pilN 324029..324670 (+) 642 WP_140951736.1 PilN domain-containing protein Machinery gene
  HUF98_RS01535 (HUF98_01535) pilO 324667..325407 (+) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  HUF98_RS01540 (HUF98_01540) pilP 325418..325945 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  HUF98_RS01545 (HUF98_01545) pilQ 326008..328173 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  HUF98_RS01550 (HUF98_01550) aroK 328185..328754 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24077.39 Da        Isoelectric Point: 5.1428

>NTDB_id=453283 HUF98_RS01530 WP_140951736.1 324029..324670(+) (pilN) [Acinetobacter baumannii strain YC103]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKSASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=453283 HUF98_RS01530 WP_140951736.1 324029..324670(+) (pilN) [Acinetobacter baumannii strain YC103]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AACGAAGAGAAAAAAGATAAGTCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGAGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

98.592

100

0.986
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709