Detailed information NTG0452867

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: HUE57_RS04830
• Genome accession: NZ_CP054491
• Coordinates: 857890..858957 (-)
• Length: 355 a.a.
• NCBI ID: WP_201790704.1
• Uniprot ID: A0A1T2LB06
• Organism: Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 852890..863957

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUE57_RS04795 (HUE57_04795)	-	853410..853934 (-)	525	Protein_982	shikimate kinase	-
HUE57_RS04800 (HUE57_04800)	-	854025..854514 (-)	490	Protein_983	type II and III secretion system protein	-
HUE57_RS04805 (HUE57_04805)	pilQ	854601..855680 (-)	1080	WP_174672813.1	type IV pilus secretin PilQ	Machinery gene
HUE57_RS04810 (HUE57_04810)	-	855655..856206 (-)	552	WP_174672814.1	AMIN domain-containing protein	-
HUE57_RS04815 (HUE57_04815)	-	856223..856762 (-)	540	WP_174672815.1	pilus assembly protein PilP	-
HUE57_RS04820 (HUE57_04820)	-	856759..857339 (-)	581	Protein_987	type 4a pilus biogenesis protein PilO	-
HUE57_RS20170 (HUE57_04825)	-	857343..857480 (-)	138	WP_420885708.1	hypothetical protein	-
HUE57_RS04830 (HUE57_04830)	comM	857890..858957 (-)	1068	WP_201790704.1	pilus assembly protein PilM	Machinery gene
HUE57_RS04835 (HUE57_04835)	-	859192..861645 (+)	2454	WP_078482051.1	penicillin-binding protein 1A	-
HUE57_RS04840 (HUE57_04840)	-	861703..862299 (+)	597	WP_078482052.1	hypothetical protein	-
HUE57_RS04845 (HUE57_04845)	-	862296..863549 (-)	1254	WP_078482053.1	malic enzyme-like NAD(P)-binding protein	-

Sequence

Protein

• Length: 355 a.a.
• Molecular weight: 38337.74 Da
• Isoelectric Point: 4.5083

>NTDB_id=452867 HUE57_RS04830 WP_201790704.1 857890..858957(-) (comM) [Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall]
MSLALPFSKKKTPLLGLDISSTAVKLLELSKSGKRYRVESYAVEPLPANSVVEKNITDVSAVGDAIKKAVKRSGTRQKNI
AAAVSGSAVITKVITMPGNLSDDELVGQIEMEADQYIPFPLEEVNLDFEVLGRTEKDEEMVDVLLAASRSENIDVRVEAI
ETGSLNAKIIDVEAYAMENAFGLIADQLPDEGQGTVAVIDVGATMTTLSVLHNRRTIYTREQVFGGKQLTEEIMRRYGLS
YEEAGMAKRQGGLPDNYAMEALEPFKEAMTQQVSRSLQFFFSSSQYNSVDNIVLAGGSASIPGIDELIAERIGTPTSIAN
PFANMSLASKVKPQVLGNDAPALMIACGLAMRSFD

Nucleotide

• Length: 1068 bp

>NTDB_id=452867 HUE57_RS04830 WP_201790704.1 857890..858957(-) (comM) [Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall]
GTGAGTCTCGCGCTGCCCTTTAGCAAAAAGAAGACCCCACTGCTCGGCCTGGACATTAGTTCCACGGCTGTAAAGCTCCT
TGAGCTCAGCAAAAGCGGAAAACGCTATCGCGTTGAAAGCTATGCGGTCGAACCCCTTCCTGCCAACTCCGTTGTTGAGA
AAAACATCACCGATGTGTCCGCTGTAGGTGATGCAATCAAGAAGGCCGTAAAACGCTCAGGCACGCGCCAGAAGAACATC
GCCGCCGCTGTATCAGGTTCCGCAGTGATTACCAAAGTAATCACCATGCCAGGGAACCTCAGCGATGACGAACTGGTCGG
TCAAATCGAAATGGAAGCCGATCAGTACATCCCATTCCCGCTCGAAGAGGTCAACCTCGACTTTGAGGTGCTGGGTCGTA
CCGAGAAAGATGAAGAGATGGTCGATGTGCTCCTAGCTGCATCACGCAGCGAGAATATCGATGTCCGAGTAGAAGCCATC
GAAACCGGCAGCCTTAACGCCAAGATTATTGATGTTGAAGCCTATGCCATGGAAAACGCCTTCGGCCTGATCGCCGATCA
ACTCCCCGACGAAGGGCAGGGTACCGTCGCCGTTATCGACGTAGGCGCCACCATGACAACACTGAGTGTGCTGCACAATC
GTAGGACTATTTATACCCGCGAGCAGGTCTTTGGTGGAAAGCAGCTAACCGAAGAGATTATGCGCCGCTACGGTCTCTCC
TATGAAGAGGCGGGCATGGCCAAAAGACAGGGTGGCCTTCCTGACAACTACGCAATGGAGGCCCTAGAGCCGTTCAAGGA
AGCGATGACCCAACAGGTCAGCCGCTCTTTACAGTTCTTCTTCTCCTCCAGCCAATACAACAGCGTAGATAATATCGTAC
TCGCTGGTGGTAGTGCCTCCATCCCTGGCATTGATGAGTTGATCGCTGAACGCATCGGCACTCCAACCAGTATCGCAAAC
CCGTTTGCAAATATGTCCCTGGCCTCCAAGGTCAAACCACAGGTTCTCGGTAACGACGCCCCCGCACTTATGATCGCCTG
CGGCCTTGCTATGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (16-354)

3D structure

• AlphaFold DB: A0A1T2LB06

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	54.441	98.31	0.535
pilM	Acinetobacter baumannii D1279779	54.155	98.31	0.532
comM	Acinetobacter baylyi ADP1	52.436	98.31	0.515
pilM	Legionella pneumophila strain ERS1305867	47.55	97.746	0.465