Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUE58_RS02280 Genome accession   NZ_CP054490
Coordinates   424313..424801 (-) Length   162 a.a.
NCBI ID   WP_174605451.1    Uniprot ID   A0A6N0HNR9
Organism   Candidatus Ruthia endofausta isolate JDF_Ridge     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 419313..429801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUE58_RS06795 - 420406..420567 (-) 162 WP_340689630.1 B12-binding domain-containing protein -
  HUE58_RS02245 (HUE58_02245) - 420769..420993 (+) 225 WP_174605446.1 hypothetical protein -
  HUE58_RS06800 - 421057..421143 (+) 87 WP_246260858.1 hypothetical protein -
  HUE58_RS02260 (HUE58_02260) - 421145..422616 (-) 1472 Protein_443 homocysteine S-methyltransferase family protein -
  HUE58_RS02265 (HUE58_02265) - 422801..423070 (+) 270 WP_174605448.1 hypothetical protein -
  HUE58_RS02270 (HUE58_02270) - 423178..423564 (+) 387 WP_174605449.1 hypothetical protein -
  HUE58_RS02275 (HUE58_02275) - 423852..424244 (+) 393 WP_174605450.1 HIT family protein -
  HUE58_RS02280 (HUE58_02280) ssb 424313..424801 (-) 489 WP_174605451.1 single-stranded DNA-binding protein Machinery gene
  HUE58_RS02285 (HUE58_02285) - 424817..425947 (-) 1131 WP_246260839.1 MFS transporter -
  HUE58_RS02290 (HUE58_02290) - 426011..426778 (-) 768 WP_174605453.1 outer membrane protein assembly factor BamD -
  HUE58_RS02295 (HUE58_02295) - 426874..428976 (+) 2103 WP_174605454.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  HUE58_RS02300 (HUE58_02300) iscX 429055..429249 (+) 195 WP_174606219.1 Fe-S cluster assembly protein IscX -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17622.63 Da        Isoelectric Point: 5.2029

>NTDB_id=452854 HUE58_RS02280 WP_174605451.1 424313..424801(-) (ssb) [Candidatus Ruthia endofausta isolate JDF_Ridge]
MAGINKVILIGNLGQDVELKYTSNGRAVTTLSVATSESWTDKNTGKKVDKTEWHQVSLFGKLAEIAGQYLHKGSKVYVEG
SLRTRKWQDQTGADRYTTGIVVSGFNGTLQMLDRRDNADMDDAPQPQQSAPAAPVQQQAAAAPISDPIAPVDNSRFDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=452854 HUE58_RS02280 WP_174605451.1 424313..424801(-) (ssb) [Candidatus Ruthia endofausta isolate JDF_Ridge]
ATGGCAGGAATCAACAAAGTAATTTTAATAGGCAATTTAGGTCAAGATGTAGAATTGAAATACACCTCTAATGGTAGAGC
AGTAACCACTTTATCCGTTGCAACCAGTGAAAGCTGGACAGACAAAAATACAGGGAAAAAGGTTGATAAAACCGAATGGC
ACCAGGTTAGTTTATTTGGAAAATTAGCTGAAATTGCTGGTCAATACTTGCACAAAGGCTCTAAAGTTTACGTTGAAGGT
AGCCTAAGAACACGCAAATGGCAAGACCAAACTGGTGCTGACCGCTACACAACTGGAATAGTTGTGTCTGGTTTTAATGG
CACATTGCAAATGTTAGATCGTCGCGACAATGCTGATATGGATGACGCACCTCAACCTCAACAATCAGCCCCTGCTGCGC
CTGTACAACAACAAGCTGCAGCAGCGCCAATCTCAGACCCTATCGCACCTGTTGATAATTCTAGATTTGATGATGACATC
CCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0HNR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.023

100

0.556
  ssb Glaesserella parasuis strain SC1401

46.774

100

0.537
  ssb Neisseria gonorrhoeae MS11

45.251

100

0.5
  ssb Neisseria meningitidis MC58

43.956

100

0.494
  ssb Latilactobacillus sakei subsp. sakei 23K

33.889

100

0.377