Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I6H76_RS06135 Genome accession   NZ_CP065994
Coordinates   1183406..1183999 (+) Length   197 a.a.
NCBI ID   WP_006531419.1    Uniprot ID   A0ABP2DM91
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1178406..1188999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS06120 (I6H76_06120) - 1178438..1178791 (+) 354 WP_006531422.1 YlbF family regulator -
  I6H76_RS06125 (I6H76_06125) hexA 1178778..1181345 (+) 2568 WP_006531421.1 DNA mismatch repair protein MutS Machinery gene
  I6H76_RS06130 (I6H76_06130) hexB 1181465..1183405 (+) 1941 WP_006531420.1 DNA mismatch repair endonuclease MutL Machinery gene
  I6H76_RS06135 (I6H76_06135) ruvA 1183406..1183999 (+) 594 WP_006531419.1 Holliday junction branch migration protein RuvA Machinery gene
  I6H76_RS06140 (I6H76_06140) - 1184029..1184586 (+) 558 WP_043878298.1 DNA-3-methyladenine glycosylase I -
  I6H76_RS06145 (I6H76_06145) - 1184709..1185911 (+) 1203 WP_006531417.1 MFS transporter -
  I6H76_RS06150 (I6H76_06150) cinA 1186025..1187284 (+) 1260 WP_006531416.1 competence/damage-inducible protein A Machinery gene
  I6H76_RS06155 (I6H76_06155) recA 1187331..1188485 (+) 1155 WP_015695804.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21782.26 Da        Isoelectric Point: 5.3500

>NTDB_id=452824 I6H76_RS06135 WP_006531419.1 1183406..1183999(+) (ruvA) [Streptococcus infantarius strain FDAARGOS_1019]
MYDYIKGKLTKITAKYIVIEVGGLGYIVNVANPYSFSDLMNQDIQVYLHQVIREDAQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKTAQQMVLDLAGKFVDVSVENGKVSQTKAAANEQLEEAMEALL
ALGYKAAELKKIRKFFEGTNETAEQYIKSSLKMLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=452824 I6H76_RS06135 WP_006531419.1 1183406..1183999(+) (ruvA) [Streptococcus infantarius strain FDAARGOS_1019]
ATGTACGATTATATCAAAGGAAAATTAACTAAAATTACTGCGAAATACATTGTCATTGAAGTAGGGGGATTAGGCTATAT
TGTCAATGTTGCTAATCCTTACAGCTTTTCAGATTTGATGAATCAGGATATCCAAGTCTACCTTCATCAAGTAATTCGTG
AAGATGCTCAACTTTTGTTTGGCTTTCATACTGAAGACGAAAAGGCTGTTTTTCTTAATCTGATTTCAGTTTCTGGGATT
GGTCCTACAACTGCGCTAGCTATTATCGCAGTGGATGATAATGAAGGTTTGGTCAATGCTATCGACACAAGCGACATCAA
ATACTTGATGAAATTTCCGAAAATCGGGAAAAAGACTGCCCAACAAATGGTATTGGATTTGGCAGGAAAATTCGTCGATG
TTTCTGTGGAAAATGGCAAAGTTTCTCAGACCAAAGCGGCAGCAAACGAGCAGCTTGAAGAAGCCATGGAAGCTCTTTTG
GCACTTGGCTACAAAGCAGCAGAGCTTAAGAAAATTCGTAAGTTCTTTGAAGGCACAAATGAAACAGCAGAACAATACAT
CAAATCAAGCCTTAAGATGCTGATGAAAGGCTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

68.182

100

0.685
  ruvA Streptococcus pneumoniae D39

68.182

100

0.685
  ruvA Streptococcus pneumoniae TIGR4

68.02

100

0.68
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.365

100

0.437