Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   HT132_RS16380 Genome accession   NZ_CP054479
Coordinates   3325985..3326776 (-) Length   263 a.a.
NCBI ID   WP_022552784.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3320985..3331776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS16340 (HT132_16340) - 3321253..3321588 (-) 336 WP_029973977.1 SdpI family protein -
  HT132_RS16345 (HT132_16345) - 3321674..3322201 (-) 528 WP_029973978.1 SH3 domain-containing protein -
  HT132_RS16350 (HT132_16350) - 3322333..3322602 (-) 270 WP_003155492.1 YfhJ family protein -
  HT132_RS16355 (HT132_16355) - 3322726..3322878 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  HT132_RS16360 (HT132_16360) - 3323023..3323934 (+) 912 WP_029973980.1 serine protease -
  HT132_RS16365 (HT132_16365) - 3323897..3324286 (+) 390 WP_014417236.1 DUF2606 family protein -
  HT132_RS16370 (HT132_16370) - 3324326..3325519 (-) 1194 WP_029973982.1 MFS transporter -
  HT132_RS16375 (HT132_16375) - 3325664..3325978 (-) 315 WP_007408553.1 YfhH family protein -
  HT132_RS16380 (HT132_16380) recX 3325985..3326776 (-) 792 WP_022552784.1 recombination regulator RecX Regulator
  HT132_RS16385 (HT132_16385) - 3326868..3327767 (+) 900 WP_021493841.1 TIGR01777 family oxidoreductase -
  HT132_RS16390 (HT132_16390) - 3327825..3327935 (+) 111 WP_003155504.1 YfhE family protein -
  HT132_RS16395 (HT132_16395) - 3328006..3328197 (+) 192 WP_029973983.1 YfhD family protein -
  HT132_RS16400 (HT132_16400) - 3328237..3328821 (-) 585 WP_007408549.1 nitroreductase -
  HT132_RS16405 (HT132_16405) - 3328898..3329782 (-) 885 WP_021493842.1 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30964.15 Da        Isoelectric Point: 6.2729

>NTDB_id=452807 HT132_RS16380 WP_022552784.1 3325985..3326776(-) (recX) [Bacillus amyloliquefaciens strain R8-25]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDDQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=452807 HT132_RS16380 WP_022552784.1 3325985..3326776(-) (recX) [Bacillus amyloliquefaciens strain R8-25]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAGAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCTTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGATCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795