Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG   Type   Machinery gene
Locus tag   I6H76_RS05090 Genome accession   NZ_CP065994
Coordinates   1010216..1010566 (-) Length   116 a.a.
NCBI ID   WP_043878322.1    Uniprot ID   -
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1005216..1015566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS05055 (I6H76_05055) proC 1005470..1006240 (+) 771 WP_006531737.1 pyrroline-5-carboxylate reductase -
  I6H76_RS05060 (I6H76_05060) - 1006275..1006910 (-) 636 WP_014334210.1 CPBP family intramembrane glutamic endopeptidase -
  I6H76_RS05065 (I6H76_05065) - 1006925..1007380 (-) 456 WP_006531739.1 hypothetical protein -
  I6H76_RS05070 (I6H76_05070) - 1007381..1007581 (-) 201 WP_006531740.1 hypothetical protein -
  I6H76_RS05075 (I6H76_05075) - 1007597..1007794 (-) 198 WP_006531741.1 helix-turn-helix transcriptional regulator -
  I6H76_RS05080 (I6H76_05080) - 1007953..1009152 (-) 1200 WP_006531742.1 acetate kinase -
  I6H76_RS05085 (I6H76_05085) comGH 1009206..1010162 (-) 957 WP_006531743.1 class I SAM-dependent methyltransferase Machinery gene
  I6H76_RS05090 (I6H76_05090) comGG 1010216..1010566 (-) 351 WP_043878322.1 competence type IV pilus minor pilin ComGG Machinery gene
  I6H76_RS05095 (I6H76_05095) comGF 1010538..1010975 (-) 438 WP_006531745.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6H76_RS05100 (I6H76_05100) comGE 1010959..1011252 (-) 294 WP_006531746.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6H76_RS05105 (I6H76_05105) comGD 1011206..1011637 (-) 432 WP_006531747.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6H76_RS05110 (I6H76_05110) comGC/cglC 1011621..1011914 (-) 294 WP_006531748.1 competence type IV pilus major pilin ComGC Machinery gene
  I6H76_RS05115 (I6H76_05115) comGB 1011914..1012957 (-) 1044 WP_174221225.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6H76_RS05120 (I6H76_05120) comGA 1012881..1013822 (-) 942 WP_043878331.1 competence type IV pilus ATPase ComGA Machinery gene
  I6H76_RS05125 (I6H76_05125) - 1013935..1014264 (-) 330 WP_006531751.1 DUF1033 family protein -

Sequence


Protein


Download         Length: 116 a.a.        Molecular weight: 13446.62 Da        Isoelectric Point: 7.2730

>NTDB_id=452807 I6H76_RS05090 WP_043878322.1 1010216..1010566(-) (comGG) [Streptococcus infantarius strain FDAARGOS_1019]
MFTLLRRQVKAGILLYALLMAAIFALLLQFYLGRVVASERQHQAQIKSAQAYLMAEMSKDLADEESGQCQFDKGTVSYHY
KDKLLVETVMLDSKEEFQYTFYLPKKEKQALEKESH

Nucleotide


Download         Length: 351 bp        

>NTDB_id=452807 I6H76_RS05090 WP_043878322.1 1010216..1010566(-) (comGG) [Streptococcus infantarius strain FDAARGOS_1019]
TTGTTTACACTTTTGAGACGACAAGTTAAAGCGGGAATTTTATTATATGCTTTACTGATGGCGGCTATCTTTGCCCTGCT
TTTGCAATTTTATTTGGGGCGCGTGGTTGCAAGTGAGCGTCAGCATCAAGCTCAGATAAAATCAGCCCAAGCTTACCTGA
TGGCAGAAATGAGTAAAGACTTGGCTGATGAGGAATCAGGACAATGCCAATTTGATAAAGGAACAGTAAGTTATCACTAC
AAAGACAAACTCTTAGTAGAGACCGTTATGTTAGATAGCAAAGAGGAGTTTCAATACACGTTTTATCTTCCTAAGAAAGA
AAAACAAGCACTTGAAAAAGAAAGTCACTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

47.17

91.379

0.431

  comGG Streptococcus mutans UA159

47.17

91.379

0.431

  comGG/cglG Streptococcus mitis NCTC 12261

45.455

85.345

0.388

  comGG/cglG Streptococcus pneumoniae Rx1

44.444

85.345

0.379

  comGG/cglG Streptococcus pneumoniae D39

44.444

85.345

0.379

  comGG/cglG Streptococcus pneumoniae R6

44.444

85.345

0.379

  comGG/cglG Streptococcus pneumoniae TIGR4

44.444

85.345

0.379