Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HT132_RS18655 Genome accession   NZ_CP054479
Coordinates   3784584..3785537 (-) Length   317 a.a.
NCBI ID   WP_015239156.1    Uniprot ID   A0AAP3YGS2
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3779584..3790537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS18635 (HT132_18635) - 3780463..3781887 (+) 1425 WP_017419270.1 MDR family MFS transporter -
  HT132_RS18640 (HT132_18640) - 3781929..3782873 (-) 945 WP_021495116.1 siderophore ABC transporter substrate-binding protein -
  HT132_RS18645 (HT132_18645) - 3782895..3783653 (-) 759 WP_063636991.1 ABC transporter ATP-binding protein -
  HT132_RS18650 (HT132_18650) - 3783647..3784594 (-) 948 WP_174532715.1 iron chelate uptake ABC transporter family permease subunit -
  HT132_RS18655 (HT132_18655) ceuB 3784584..3785537 (-) 954 WP_015239156.1 ABC transporter permease Machinery gene
  HT132_RS18660 (HT132_18660) - 3785951..3787315 (+) 1365 WP_045508518.1 aspartate kinase -
  HT132_RS18665 (HT132_18665) - 3787410..3787505 (+) 96 WP_021495118.1 YjcZ family sporulation protein -
  HT132_RS18670 (HT132_18670) phrC 3787657..3787776 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  HT132_RS18675 (HT132_18675) rapC 3787760..3788908 (-) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  HT132_RS18680 (HT132_18680) - 3789067..3790494 (-) 1428 WP_174532716.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.24 Da        Isoelectric Point: 9.6741

>NTDB_id=452809 HT132_RS18655 WP_015239156.1 3784584..3785537(-) (ceuB) [Bacillus amyloliquefaciens strain R8-25]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=452809 HT132_RS18655 WP_015239156.1 3784584..3785537(-) (ceuB) [Bacillus amyloliquefaciens strain R8-25]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCGGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGATTGGGCAAGGCTCGGAATCTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATATGACCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCGCTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536