Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HTY51_RS15990 Genome accession   NZ_CP054424
Coordinates   3293144..3294664 (+) Length   506 a.a.
NCBI ID   WP_174253653.1    Uniprot ID   A0A6N0BVI2
Organism   Rhodoferax sp. BAB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3288144..3299664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY51_RS15970 (HTY51_15970) glcE 3289082..3290161 (-) 1080 WP_174253650.1 glycolate oxidase subunit GlcE -
  HTY51_RS15975 (HTY51_15975) - 3290308..3291810 (-) 1503 WP_174253651.1 ammonium transporter -
  HTY51_RS15980 (HTY51_15980) glnK 3291838..3292176 (-) 339 WP_174253652.1 P-II family nitrogen regulator -
  HTY51_RS15985 (HTY51_15985) - 3292205..3292939 (-) 735 WP_254606907.1 TorF family putative porin -
  HTY51_RS15990 (HTY51_15990) comM 3293144..3294664 (+) 1521 WP_174253653.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HTY51_RS15995 (HTY51_15995) - 3294677..3295897 (-) 1221 WP_174253654.1 MFS transporter -
  HTY51_RS16000 (HTY51_16000) - 3295991..3297199 (+) 1209 WP_174253655.1 MFS transporter -
  HTY51_RS16005 (HTY51_16005) - 3297196..3297852 (-) 657 WP_174253656.1 glycine zipper 2TM domain-containing protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53367.20 Da        Isoelectric Point: 7.8586

>NTDB_id=452439 HTY51_RS15990 WP_174253653.1 3293144..3294664(+) (comM) [Rhodoferax sp. BAB1]
MSLSLVHSRALLGLDAAAVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAILNAGLEFPHNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDPAALAGHEFAGELSLSGELRPVRGALAMALALRAVPTKLVLPPGSAEEAALVPGITIYKATH
LLDLVQQFLPGRGPAHPDAPIWSPLAPQPLHIRWDGPDLADVKGQAAPKRALEIAAAGGHSILFSGPPGAGKSMLAERLA
GLLPPMSTDEALESAAIASLAGRFEIAHWGQRPTCSPHHSASAVALVGGGSPPRPGEVSLAHHGVLYLDELPEFPRAALE
ALREPLESGRITIARAARRAEFPARFQLVAAMNPCPCGHLGSAQRACRCTPDQVARYQGRLSGPLLDRIDLHVQVGALPS
TELLQASAGENTASVRARCTAAHARALARQGKPNHALTSQEIDTHTRPEEDALRFLDTAAVRLGWSARGLHRTLKVARTI
ADLADAPRITLEHVAEALQYRQAARA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=452439 HTY51_RS15990 WP_174253653.1 3293144..3294664(+) (comM) [Rhodoferax sp. BAB1]
ATGAGCCTGTCACTGGTGCATAGCCGGGCCCTGCTGGGCCTGGACGCCGCCGCGGTCACCGTGGAAGTCCACCTCGCCAA
CGGACTGCCCAGCTTCACGCTGGTCGGCCTGGCGGAAACCGAAGTCAAGGAAGCCCGCGAGCGCGTGCGCTCGGCCATCC
TGAACGCCGGGCTGGAGTTCCCGCACAACAAACGCATCACGGTCAATCTGGCACCCGCTGACTTACCCAAGGACTCCGGG
CGCTTCGATCTGCCCATTGCCCTGGGCATCCTGGCGGCCAGTGGCCAGATCGACCCAGCCGCCCTGGCCGGTCATGAGTT
CGCCGGGGAGCTGTCCCTTTCGGGTGAGTTGCGCCCGGTCCGTGGCGCCCTGGCCATGGCATTGGCCCTGCGCGCCGTAC
CCACAAAGCTGGTGCTGCCCCCGGGCAGTGCCGAGGAGGCCGCCCTGGTGCCAGGCATCACCATCTACAAGGCGACCCAC
CTGCTGGACCTGGTGCAACAGTTCCTGCCCGGCCGGGGCCCGGCCCACCCCGATGCACCCATCTGGTCCCCGTTGGCCCC
GCAGCCGCTCCATATCCGGTGGGATGGCCCCGATCTGGCCGATGTGAAGGGCCAAGCCGCCCCCAAGCGGGCCCTCGAAA
TCGCAGCTGCCGGCGGCCACAGCATTTTGTTCAGCGGCCCGCCGGGTGCCGGCAAGTCCATGCTGGCCGAGCGTCTGGCC
GGCCTGCTGCCCCCCATGTCGACCGACGAGGCGCTGGAAAGCGCCGCCATCGCCAGCCTGGCCGGGCGCTTCGAGATCGC
CCACTGGGGCCAACGCCCCACTTGCAGCCCGCACCACTCGGCCAGCGCGGTGGCGCTGGTGGGCGGTGGTTCACCACCAC
GCCCCGGCGAGGTCTCGCTGGCCCACCACGGCGTGCTTTATCTGGATGAACTGCCGGAATTTCCGCGGGCCGCGCTGGAA
GCCTTGCGTGAGCCGCTGGAATCCGGCCGCATCACCATTGCGCGCGCCGCGCGGCGCGCCGAGTTCCCGGCGCGTTTCCA
GCTGGTGGCCGCCATGAACCCCTGCCCCTGCGGCCACCTGGGCTCGGCCCAGCGCGCCTGCCGCTGCACGCCCGACCAGG
TGGCGCGTTACCAGGGGCGGCTCTCCGGCCCCCTGCTGGACCGCATCGACCTGCATGTGCAAGTGGGCGCCCTGCCCAGC
ACCGAACTGTTGCAGGCAAGCGCCGGCGAAAACACGGCCAGCGTGCGTGCGCGCTGCACGGCGGCGCACGCACGCGCCCT
GGCACGCCAGGGCAAACCCAACCATGCGCTCACCAGCCAGGAGATCGACACACACACCCGCCCCGAAGAAGACGCCCTGC
GTTTTCTGGACACGGCCGCGGTGCGGCTGGGCTGGTCGGCACGCGGCCTGCACCGCACGCTGAAGGTAGCGCGCACCATT
GCCGATCTGGCCGATGCACCACGCATCACACTGGAGCATGTCGCCGAAGCGCTGCAGTACCGGCAAGCGGCGCGGGCCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-401)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0BVI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.649

100

0.538
  comM Vibrio campbellii strain DS40M4

51.772

100

0.52
  comM Glaesserella parasuis strain SC1401

51.373

100

0.518
  comM Haemophilus influenzae Rd KW20

50.784

100

0.512
  comM Legionella pneumophila str. Paris

49.407

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.407

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.734

100

0.417