Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FCG87_RS21220 Genome accession   NZ_CP054411
Coordinates   4470993..4472513 (+) Length   506 a.a.
NCBI ID   WP_137048564.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain KCJ3K19     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4465993..4477513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCG87_RS21195 (FCG87_021195) ilvE 4467559..4468488 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  FCG87_RS21200 (FCG87_021200) ilvM 4468507..4468770 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  FCG87_RS21205 (FCG87_021205) ilvG 4468767..4470413 (-) 1647 WP_032608559.1 acetolactate synthase 2 catalytic subunit -
  FCG87_RS21210 ilvX 4470416..4470466 (-) 51 WP_192930497.1 peptide IlvX -
  FCG87_RS21215 (FCG87_021210) ilvL 4470553..4470651 (-) 99 WP_001311244.1 ilv operon leader peptide -
  FCG87_RS21220 (FCG87_021215) comM 4470993..4472513 (+) 1521 WP_137048564.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FCG87_RS21225 (FCG87_021220) - 4472544..4472882 (-) 339 WP_006808641.1 DUF413 domain-containing protein -
  FCG87_RS21230 (FCG87_021225) hdfR 4473001..4473822 (+) 822 WP_003860190.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54774.77 Da        Isoelectric Point: 7.3360

>NTDB_id=452272 FCG87_RS21220 WP_137048564.1 4470993..4472513(+) (comM) [Enterobacter hormaechei strain KCJ3K19]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTPGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVAPDSPEDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLIKLSGPFLDRFDLSLEIPLPPPGLLRQTGIKG
ESSATVRERVIAAQARQYVRQNRLNARLDNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=452272 FCG87_RS21220 WP_137048564.1 4470993..4472513(+) (comM) [Enterobacter hormaechei strain KCJ3K19]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATCGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCAGAAACGACCGTTAAAGAGGCGAGGGATCGCGTGCGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATCAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAATACGCCAGGGCTAAGCTCGTGCGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GACAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTAAGCCTTATCGCCGAAAAGGGATGTCTTGTCGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGACGAGGTGGCGCCAGATTCGCC
CGAGGATCTCAGCGATATTATGGGTCAGGAACAGGGTAAACGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGATTGAGCGGCCTGTTGCCACCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCTACGTCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCTCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGTTCGATCCCCGGGCCGGGTGAAATCTCACTGGCGC
ACAACGGCATTCTGTTTCTGGATGAATTGCCAGAGTTTGAACGCCGCGTGCTGGATGCATTGCGGGAGCCGATTGAATCC
GGCGAAATCCATTTGTCTCGTACACGGGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCCGCGATGAACCCTAG
CCCTACGGGTCATTATCAGGGCAATCATAACCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGATTAAGCTGTCCGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCCCCGCCCGGTCTGCTGAGGCAAACCGGTATTAAGGGC
GAAAGCTCAGCAACAGTGCGTGAACGGGTTATTGCGGCACAGGCGCGGCAGTATGTTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACAGCGGGATCCGACAGTTTTGTTCTCTCAACGCTGAAGATGCGGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTTGCGCGCACGGTCGCCGACGTGGAGGGCTGCCCCGGAATA
GAGAGGCGGCATTTGCAGGAGGCATTAAGTTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.317

100

0.589
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579
  comM Vibrio cholerae strain A1552

58.167

99.209

0.577
  comM Legionella pneumophila str. Paris

49.497

98.221

0.486
  comM Legionella pneumophila strain ERS1305867

49.497

98.221

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.529

100

0.439