Detailed information NTG0045215

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: BAMTA208_RS21600
• Genome accession: NC_017188
• Coordinates: 3409576..3410265 (-)
• Length: 229 a.a.
• NCBI ID: WP_198315882.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens TA208
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3404576..3415265

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMTA208_RS17300 (BAMTA208_17915)	fliW	3404666..3405097 (-)	432	WP_007407475.1	flagellar assembly protein FliW	-
BAMTA208_RS17305 (BAMTA208_17920)	-	3405127..3405696 (-)	570	WP_014471091.1	DUF6470 family protein	-
BAMTA208_RS17310 (BAMTA208_17925)	flgL	3405788..3406705 (-)	918	WP_013353778.1	flagellar hook-associated protein FlgL	-
BAMTA208_RS17315 (BAMTA208_17930)	flgK	3406717..3408234 (-)	1518	WP_014471092.1	flagellar hook-associated protein FlgK	-
BAMTA208_RS17320 (BAMTA208_17935)	-	3408250..3408732 (-)	483	WP_013353780.1	flagellar protein FlgN	-
BAMTA208_RS17325 (BAMTA208_17940)	flgM	3408747..3409013 (-)	267	WP_013353781.1	flagellar biosynthesis anti-sigma factor FlgM	-
BAMTA208_RS17330 (BAMTA208_17945)	-	3409083..3409502 (-)	420	WP_014471093.1	TIGR03826 family flagellar region protein	-
BAMTA208_RS21600 (BAMTA208_17950)	comFC	3409576..3410265 (-)	690	WP_198315882.1	ComF family protein	Machinery gene
BAMTA208_RS17340 (BAMTA208_17955)	-	3410271..3410555 (-)	285	WP_013353784.1	late competence development ComFB family protein	-
BAMTA208_RS17345 (BAMTA208_17960)	comFA	3410614..3411999 (-)	1386	WP_013353785.1	DEAD/DEAH box helicase	Machinery gene
BAMTA208_RS17350 (BAMTA208_17965)	-	3412106..3412954 (-)	849	WP_013353786.1	DegV family protein	-
BAMTA208_RS17355 (BAMTA208_17970)	degU	3413051..3413740 (-)	690	WP_014471094.1	two-component system response regulator DegU	Regulator
BAMTA208_RS17360 (BAMTA208_17975)	degS	3413817..3414980 (-)	1164	WP_013353787.1	two-component sensor histidine kinase DegS	Regulator

Sequence

Protein

• Length: 229 a.a.
• Molecular weight: 25295.06 Da
• Isoelectric Point: 8.6865

>NTDB_id=45215 BAMTA208_RS21600 WP_198315882.1 3409576..3410265(-) (comFC) [Bacillus amyloliquefaciens TA208]
MNCLLCDSPISRSLTWSSLFSLAPEQEVCSACSNQFEKIEGPVCSLCGRPQQSNKKCADCMARESKTEQRFLLRQNRSVF
LYNDAMKDSLARFKFRGDTKIIQTFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAGALLTAGKALSVSSFTLIRS

Nucleotide

• Length: 690 bp

>NTDB_id=45215 BAMTA208_RS21600 WP_198315882.1 3409576..3410265(-) (comFC) [Bacillus amyloliquefaciens TA208]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGATCACTGACTTGGAGTTCTCTATTTTCTCTGGCGCCGGAGCAAGA
GGTATGCAGCGCATGCAGCAATCAATTTGAAAAAATCGAAGGCCCCGTGTGCAGTTTATGCGGAAGGCCTCAGCAGTCAA
ACAAAAAATGCGCTGACTGCATGGCGCGGGAATCAAAAACGGAACAGCGCTTTTTGTTGCGGCAGAACCGTTCGGTTTTT
TTGTATAATGATGCAATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATACGAAAATCATTCAAACATTTGAACG
TGATTTTACTGCCGGCTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGC
TGGCGGAGCGCGGATTTAATCAATCCGAGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGGAGCTCTGCTGA
CAGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (171-227)

• Double zinc ribbon domain (DZR_2) (2-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	59.471	99.127	0.59
comFC/cflB	Streptococcus mitis NCTC 12261	36.245	100	0.362
comFC/cflB	Streptococcus pneumoniae Rx1	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae D39	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae R6	35.931	100	0.362