Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BAMTA208_RS17355 Genome accession   NC_017188
Coordinates   3413051..3413740 (-) Length   229 a.a.
NCBI ID   WP_014471094.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens TA208     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3408051..3418740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS17320 (BAMTA208_17935) - 3408250..3408732 (-) 483 WP_013353780.1 flagellar protein FlgN -
  BAMTA208_RS17325 (BAMTA208_17940) flgM 3408747..3409013 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAMTA208_RS17330 (BAMTA208_17945) - 3409083..3409502 (-) 420 WP_014471093.1 TIGR03826 family flagellar region protein -
  BAMTA208_RS21600 (BAMTA208_17950) comFC 3409576..3410265 (-) 690 WP_198315882.1 ComF family protein Machinery gene
  BAMTA208_RS17340 (BAMTA208_17955) - 3410271..3410555 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  BAMTA208_RS17345 (BAMTA208_17960) comFA 3410614..3411999 (-) 1386 WP_013353785.1 DEAD/DEAH box helicase Machinery gene
  BAMTA208_RS17350 (BAMTA208_17965) - 3412106..3412954 (-) 849 WP_013353786.1 DegV family protein -
  BAMTA208_RS17355 (BAMTA208_17970) degU 3413051..3413740 (-) 690 WP_014471094.1 two-component system response regulator DegU Regulator
  BAMTA208_RS17360 (BAMTA208_17975) degS 3413817..3414980 (-) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator
  BAMTA208_RS17365 (BAMTA208_17980) - 3415203..3415850 (+) 648 WP_013353788.1 YigZ family protein -
  BAMTA208_RS17370 (BAMTA208_17985) - 3415855..3417120 (+) 1266 WP_014471095.1 LCP family protein -
  BAMTA208_RS17375 (BAMTA208_17990) - 3417220..3418296 (-) 1077 WP_013353790.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25824.49 Da        Isoelectric Point: 5.9446

>NTDB_id=45205 BAMTA208_RS17355 WP_014471094.1 3413051..3413740(-) (degU) [Bacillus amyloliquefaciens TA208]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWGEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=45205 BAMTA208_RS17355 WP_014471094.1 3413051..3413740(-) (degU) [Bacillus amyloliquefaciens TA208]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGATATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAGCAGCTTGTTGAGCTGTACCCTGAATCTAAGGTA
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCGGATACTTTAATCGAGGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCACCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCTGTTGTCGTAGCCATTAAAAACGGCTGGGGAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment