Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   BAMTA208_RS17360 Genome accession   NC_017188
Coordinates   3413817..3414980 (-) Length   387 a.a.
NCBI ID   WP_013353787.1    Uniprot ID   A0A9P1JKJ4
Organism   Bacillus amyloliquefaciens TA208     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3408817..3419980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS17330 (BAMTA208_17945) - 3409083..3409502 (-) 420 WP_014471093.1 TIGR03826 family flagellar region protein -
  BAMTA208_RS21600 (BAMTA208_17950) comFC 3409576..3410265 (-) 690 WP_198315882.1 ComF family protein Machinery gene
  BAMTA208_RS17340 (BAMTA208_17955) - 3410271..3410555 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  BAMTA208_RS17345 (BAMTA208_17960) comFA 3410614..3411999 (-) 1386 WP_013353785.1 DEAD/DEAH box helicase Machinery gene
  BAMTA208_RS17350 (BAMTA208_17965) - 3412106..3412954 (-) 849 WP_013353786.1 DegV family protein -
  BAMTA208_RS17355 (BAMTA208_17970) degU 3413051..3413740 (-) 690 WP_014471094.1 two-component system response regulator DegU Regulator
  BAMTA208_RS17360 (BAMTA208_17975) degS 3413817..3414980 (-) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator
  BAMTA208_RS17365 (BAMTA208_17980) - 3415203..3415850 (+) 648 WP_013353788.1 YigZ family protein -
  BAMTA208_RS17370 (BAMTA208_17985) - 3415855..3417120 (+) 1266 WP_014471095.1 LCP family protein -
  BAMTA208_RS17375 (BAMTA208_17990) - 3417220..3418296 (-) 1077 WP_013353790.1 glycosyltransferase family 4 protein -
  BAMTA208_RS17380 (BAMTA208_17995) tuaH 3418429..3419625 (-) 1197 WP_014471096.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45028.85 Da        Isoelectric Point: 7.1379

>NTDB_id=45206 BAMTA208_RS17360 WP_013353787.1 3413817..3414980(-) (degS) [Bacillus amyloliquefaciens TA208]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKEAKQKKNKSFGLLGMKERVDLLEGTITIDSKLGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=45206 BAMTA208_RS17360 WP_013353787.1 3413817..3414980(-) (degS) [Bacillus amyloliquefaciens TA208]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTCGAAGTACATACCCGGCATGCAAGAAACCGCTTGTCGGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTGCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATTATCGAAGCCCAGGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCGGCTCAAATGCTGGCAAATGTTATGATGAGATCGGAATTGATAGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGCTTTCAGGAAATCAGAAATCTTCGCCAGAATGTGCGGAATGCTCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCGCTGAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACTGCTGATTTTGTGGTTCTTATTATTAAGGACAACGGAAAAGGCTTTGATATCAAGGAAGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTCGAAGGAACGATAACGATAGACTCTAAACTAGGTCTTG
GGACATTTATCATGATTAAGGTTCCTTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.325

99.483

0.948

Multiple sequence alignment