Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HPE50_RS15630 Genome accession   NZ_CP054353
Coordinates   3110634..3111263 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SCU-172     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3105634..3116263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE50_RS15615 (HPE50_15615) helD 3105876..3107930 (-) 2055 WP_001571222.1 DNA helicase IV -
  HPE50_RS15620 (HPE50_15620) yccF 3108053..3108499 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HPE50_RS15625 (HPE50_15625) yccS 3108509..3110671 (+) 2163 WP_001571221.1 YccS family putative transporter -
  HPE50_RS15630 (HPE50_15630) sxy/tfoX 3110634..3111263 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HPE50_RS15635 (HPE50_15635) sulA 3111482..3111991 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  HPE50_RS15640 (HPE50_15640) ompA 3112348..3113400 (+) 1053 WP_000750418.1 porin OmpA -
  HPE50_RS15645 (HPE50_15645) matP 3113476..3113928 (-) 453 WP_000877175.1 macrodomain Ter protein MatP -
  HPE50_RS15650 (HPE50_15650) ycbZ 3114114..3115874 (+) 1761 WP_000156477.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=452017 HPE50_RS15630 WP_000839153.1 3110634..3111263(-) (sxy/tfoX) [Escherichia coli strain SCU-172]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=452017 HPE50_RS15630 WP_000839153.1 3110634..3111263(-) (sxy/tfoX) [Escherichia coli strain SCU-172]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1