Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SDSE_RS11305 Genome accession   NC_019042
Coordinates   114224..114652 (+) Length   142 a.a.
NCBI ID   WP_041781473.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis AC-2713     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 109224..119652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDSE_RS11285 (S_dysgal_equisimilis_AC2713_169) - 111567..111932 (+) 366 WP_003055257.1 DUF1033 family protein -
  SDSE_RS11290 (S_dysgal_equisimilis_AC2713_170) comGA/cglA 112013..112954 (+) 942 WP_003055265.1 competence type IV pilus ATPase ComGA Machinery gene
  SDSE_RS11295 (S_dysgal_equisimilis_AC2713_171) comGB 112890..113921 (+) 1032 WP_015057201.1 competence type IV pilus assembly protein ComGB Machinery gene
  SDSE_RS11300 (S_dysgal_equisimilis_AC2713_172) comGC 113923..114249 (+) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  SDSE_RS11305 (S_dysgal_equisimilis_AC2713_173) comGD 114224..114652 (+) 429 WP_041781473.1 competence type IV pilus minor pilin ComGD Machinery gene
  SDSE_RS11310 (S_dysgal_equisimilis_AC2713_174) comGE 114660..114905 (+) 246 WP_003058569.1 competence type IV pilus minor pilin ComGE Machinery gene
  SDSE_RS11315 (S_dysgal_equisimilis_AC2713_175) comGF 114886..115326 (+) 441 WP_003058520.1 competence type IV pilus minor pilin ComGF Machinery gene
  SDSE_RS11320 (S_dysgal_equisimilis_AC2713_176) comGG 115349..115678 (+) 330 WP_003058539.1 competence type IV pilus minor pilin ComGG -
  SDSE_RS11325 (S_dysgal_equisimilis_AC2713_177) comGH 115741..116694 (+) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  SDSE_RS11330 (S_dysgal_equisimilis_AC2713_178) - 116753..117949 (+) 1197 WP_015057203.1 acetate kinase -
  SDSE_RS11335 (S_dysgal_equisimilis_AC2713_179) - 118255..118461 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  SDSE_RS11340 (S_dysgal_equisimilis_AC2713_180) - 118564..119244 (+) 681 WP_012766451.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16400.87 Da        Isoelectric Point: 9.9660

>NTDB_id=45174 SDSE_RS11305 WP_041781473.1 114224..114652(+) (comGD) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MRLKNCNLKAFTMLESLLTLSVTSFIVLGLSVPVTSSYRRAQEQLFFTRFEHFYRHQQKLAILEHDQRVLTISSKQMLAA
EESLTIPDLIRVKNSQQLVIDQMGGNHSLAKIIFETTDQRVTYQFYLGSGNYQKTSQSLHRS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=45174 SDSE_RS11305 WP_041781473.1 114224..114652(+) (comGD) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGAGACTCAAAAACTGCAACCTTAAAGCTTTCACAATGCTTGAAAGCTTATTAACGCTATCAGTAACAAGTTTTATTGT
CTTGGGGTTATCTGTGCCTGTGACAAGTAGTTATCGAAGGGCTCAGGAACAGCTTTTTTTCACTCGTTTTGAGCACTTTT
ATCGTCACCAACAAAAGTTGGCTATTTTGGAACATGATCAACGGGTTTTGACAATTTCTTCGAAACAAATGCTAGCGGCA
GAGGAGTCGTTAACAATACCTGACTTGATAAGGGTTAAGAATAGCCAGCAATTGGTTATTGATCAAATGGGAGGAAATCA
TTCTTTAGCAAAGATAATATTCGAGACGACTGATCAACGGGTAACTTATCAATTTTATCTAGGGAGTGGAAATTATCAAA
AAACAAGTCAAAGCTTACATCGCTCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

43.382

95.775

0.415
  comGD Streptococcus mutans UA140

44.186

90.845

0.401
  comGD Streptococcus mutans UA159

44.186

90.845

0.401
  comGD/cglD Streptococcus mitis NCTC 12261

38.235

95.775

0.366

Multiple sequence alignment