Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PMPD1_RS21755 Genome accession   NZ_CP054212
Coordinates   4535821..4537344 (+) Length   507 a.a.
NCBI ID   WP_173636001.1    Uniprot ID   A0A6M8UHT9
Organism   Paramixta manurensis strain PD-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4530821..4542344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMPD1_RS21735 (PMPD1_4281) - 4532388..4533317 (-) 930 WP_173635997.1 branched-chain amino acid transaminase -
  PMPD1_RS21740 (PMPD1_4282) ilvM 4533336..4533593 (-) 258 WP_173635998.1 acetolactate synthase 2 small subunit -
  PMPD1_RS21745 (PMPD1_4283) ilvG 4533590..4535236 (-) 1647 WP_173635999.1 acetolactate synthase 2 catalytic subunit -
  PMPD1_RS21750 ilvL 4535386..4535484 (-) 99 WP_173636000.1 ilv operon leader peptide -
  PMPD1_RS21755 (PMPD1_4284) comM 4535821..4537344 (+) 1524 WP_173636001.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PMPD1_RS21760 (PMPD1_4285) - 4537369..4537707 (-) 339 WP_173636002.1 DUF413 domain-containing protein -
  PMPD1_RS21765 (PMPD1_4286) hdfR 4537830..4538654 (+) 825 WP_173636003.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55198.12 Da        Isoelectric Point: 7.5619

>NTDB_id=451470 PMPD1_RS21755 WP_173636001.1 4535821..4537344(+) (comM) [Paramixta manurensis strain PD-1]
MTLSLVFTRAALGVQSPAVTVEVHISQGLPTFSLVGLPETTVKEARERVRSAIINSGFSFPAKRITVNLAPADLPKEGGR
YDLPIAIAILTASEQIPDDKLGRYELIGELALTGALRGVEGAIPAAMAALQAGRQLILAQDNAGDVGLIRDGESLVARHL
LDVCAFLQDKTTLSAAVAEQEVASQSCEELSDIIGQEQGKRALEVTAAGGHNLLLIGPPGTGKTMLALRLRGLMPPLTDR
EALECAAIASLSHTTPSRQSPWRQRPFRAPHHSATSFALIGGGSLPRPGEISLAHNGVLFLDELPEFERRTLDALREPIE
SGEISISRTRAKVTWPAQFQLIAAMNPSPTGHYQGHHNRSSPQQTLRYLSRLSGPFLDRFDISLEIPLLPPGTLSNQSQR
GESSRVVQQRVVVAREKQLARSGKINARLSNSEIQRWCNISPEDAQWLEAVLNSLELSVRAWQRILKVARTIADLAGEDE
INRLHLQEALSYRGIDRMLVYLHKNLA

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=451470 PMPD1_RS21755 WP_173636001.1 4535821..4537344(+) (comM) [Paramixta manurensis strain PD-1]
ATGACGTTATCTCTCGTCTTTACACGTGCGGCGTTGGGCGTTCAATCGCCCGCCGTCACCGTAGAAGTTCATATTAGCCA
GGGTTTGCCTACGTTCTCACTGGTCGGGCTCCCGGAGACTACAGTCAAAGAAGCTCGTGAGCGTGTGCGTAGCGCGATCA
TTAACAGCGGTTTTTCTTTTCCGGCTAAACGTATCACGGTCAATCTCGCCCCCGCAGACTTGCCTAAAGAAGGCGGACGC
TACGATCTTCCCATCGCTATTGCGATTTTGACGGCGTCAGAACAAATTCCCGACGATAAACTGGGGCGTTATGAGTTGAT
AGGTGAGTTAGCATTGACCGGTGCGTTACGTGGCGTAGAGGGCGCTATCCCGGCCGCCATGGCCGCTTTACAAGCCGGGC
GGCAACTTATCCTCGCACAGGATAATGCGGGTGATGTAGGGCTGATTCGTGACGGAGAAAGTCTGGTCGCCAGACATTTG
CTGGACGTCTGCGCCTTTTTACAGGATAAAACTACGCTTTCAGCGGCGGTTGCAGAGCAGGAAGTCGCTTCGCAATCCTG
CGAGGAATTGAGTGATATTATTGGCCAGGAGCAAGGGAAACGCGCGCTGGAGGTGACGGCGGCAGGAGGGCATAATCTTT
TGCTCATCGGGCCACCGGGTACCGGTAAAACAATGCTCGCCCTGCGTCTGCGCGGGTTGATGCCGCCGTTAACCGATCGG
GAAGCGTTAGAGTGTGCGGCTATTGCCAGCCTCTCGCATACAACTCCCTCTCGACAGTCTCCCTGGCGACAACGTCCTTT
TAGGGCTCCACATCATAGCGCAACTTCCTTTGCGTTGATCGGCGGAGGGAGTCTGCCTCGCCCCGGCGAGATCTCCCTCG
CACATAATGGTGTCCTTTTTCTCGATGAGTTGCCCGAGTTTGAACGACGAACGTTGGATGCGCTGCGTGAGCCGATTGAA
TCTGGCGAAATATCAATTTCGCGAACCCGAGCGAAGGTGACTTGGCCGGCGCAATTTCAACTCATTGCCGCCATGAATCC
AAGCCCAACCGGGCACTATCAGGGTCATCATAATCGCAGTTCACCACAGCAAACACTGCGCTACCTTAGCCGACTGTCAG
GCCCCTTTCTCGATCGTTTCGATATTTCTCTGGAAATTCCTCTGCTGCCGCCCGGCACGCTGAGTAATCAATCGCAACGG
GGGGAATCGAGCCGTGTCGTACAACAACGGGTGGTGGTGGCACGAGAGAAGCAACTGGCACGCAGTGGAAAAATCAATGC
CCGCTTAAGTAACAGCGAGATCCAGCGGTGGTGTAACATTTCACCTGAAGATGCGCAGTGGCTGGAGGCGGTATTGAATT
CTCTGGAACTTTCAGTTCGCGCCTGGCAGCGCATACTTAAAGTCGCAAGAACGATTGCGGATTTAGCGGGAGAAGATGAG
ATTAACCGGTTGCATTTGCAGGAAGCGCTTAGCTATCGCGGGATTGATCGCATGCTAGTGTACTTGCATAAGAATCTGGC
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8UHT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

61.431

99.211

0.609
  comM Glaesserella parasuis strain SC1401

59.843

100

0.6
  comM Haemophilus influenzae Rd KW20

59.763

100

0.598
  comM Vibrio campbellii strain DS40M4

58.73

99.408

0.584
  comM Legionella pneumophila str. Paris

47.284

98.028

0.464
  comM Legionella pneumophila strain ERS1305867

47.284

98.028

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.676

99.803

0.436