Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HQ939_RS09030 Genome accession   NZ_CP054198
Coordinates   1794493..1794948 (-) Length   151 a.a.
NCBI ID   WP_021117772.1    Uniprot ID   K4K080
Organism   Glaesserella parasuis strain YHP170504     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1789493..1799948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ939_RS09010 (HQ939_09020) dapE 1789796..1790929 (-) 1134 WP_021117768.1 succinyl-diaminopimelate desuccinylase -
  HQ939_RS09015 (HQ939_09025) - 1791013..1791681 (-) 669 WP_075606471.1 prepilin peptidase -
  HQ939_RS09020 (HQ939_09030) pilC 1791678..1792874 (-) 1197 WP_075606470.1 type II secretion system F family protein Machinery gene
  HQ939_RS09025 (HQ939_09035) pilB 1792867..1794252 (-) 1386 WP_075606469.1 GspE/PulE family protein Machinery gene
  HQ939_RS09030 (HQ939_09040) pilA 1794493..1794948 (-) 456 WP_021117772.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HQ939_RS09035 (HQ939_09045) radA 1795136..1796512 (+) 1377 WP_075606468.1 DNA repair protein RadA -
  HQ939_RS09040 (HQ939_09050) gmk 1796564..1797190 (-) 627 WP_075606467.1 guanylate kinase -
  HQ939_RS09045 (HQ939_09055) gpt 1797444..1797923 (-) 480 WP_005714020.1 xanthine phosphoribosyltransferase -
  HQ939_RS09050 (HQ939_09060) - 1798103..1799557 (+) 1455 WP_021117775.1 aminoacyl-histidine dipeptidase -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 15865.36 Da        Isoelectric Point: 9.0982

>NTDB_id=451410 HQ939_RS09030 WP_021117772.1 1794493..1794948(-) (pilA) [Glaesserella parasuis strain YHP170504]
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNTGALTNCTGGSNGV
QANKTDVADAKYLKSISVAAGVITVAGKGNIDGYGYTMTPTLANNNITWTTSCRGSDTSLFPANFCGQKAP

Nucleotide


Download         Length: 456 bp        

>NTDB_id=451410 HQ939_RS09030 WP_021117772.1 1794493..1794948(-) (pilA) [Glaesserella parasuis strain YHP170504]
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTGATGATCGTGATCGCCATCATTGC
TATTTTAGCCACGATTGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCTGCACTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACACAGGGGCTTTAACTAACTGTACAGGGGGTTCTAACGGCGTT
CAAGCCAATAAAACCGATGTTGCCGATGCTAAATATCTTAAATCTATTTCCGTCGCTGCAGGTGTAATCACAGTGGCTGG
TAAAGGCAACATTGATGGCTACGGCTACACAATGACCCCGACATTAGCCAATAACAACATCACTTGGACAACAAGCTGTC
GAGGTTCTGACACCAGTTTATTCCCTGCGAATTTCTGTGGGCAGAAAGCACCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-33)

Pilin (bacterial filament) (Pilin)

(43-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K4K080

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

86.184

100

0.868
  pilA Haemophilus influenzae 86-028NP

59.184

97.351

0.576
  pilA Haemophilus influenzae Rd KW20

57.143

97.351

0.556
  comP Acinetobacter baylyi ADP1

45.517

96.026

0.437