NTDB

Overview

Name	pilC	Type	Machinery gene
Locus tag	HQ939_RS09020	Genome accession	NZ_CP054198
Coordinates	1791678..1792874 (-)	Length	398 a.a.
NCBI ID	WP_075606470.1	Uniprot ID	-
Organism	Glaesserella parasuis strain YHP170504
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1786678..1797874

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ939_RS08995 (HQ939_09005)	-	1787394..1787783 (-)	390	WP_075606473.1	SufE family protein	-
HQ939_RS09000 (HQ939_09010)	clpP	1787884..1788465 (+)	582	WP_075606472.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	-
HQ939_RS09005 (HQ939_09015)	clpX	1788472..1789722 (+)	1251	WP_042906659.1	ATP-dependent protease ATP-binding subunit ClpX	-
HQ939_RS09010 (HQ939_09020)	dapE	1789796..1790929 (-)	1134	WP_021117768.1	succinyl-diaminopimelate desuccinylase	-
HQ939_RS09015 (HQ939_09025)	-	1791013..1791681 (-)	669	WP_075606471.1	prepilin peptidase	-
HQ939_RS09020 (HQ939_09030)	pilC	1791678..1792874 (-)	1197	WP_075606470.1	type II secretion system F family protein	Machinery gene
HQ939_RS09025 (HQ939_09035)	pilB	1792867..1794252 (-)	1386	WP_075606469.1	GspE/PulE family protein	Machinery gene
HQ939_RS09030 (HQ939_09040)	pilA	1794493..1794948 (-)	456	WP_021117772.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
HQ939_RS09035 (HQ939_09045)	radA	1795136..1796512 (+)	1377	WP_075606468.1	DNA repair protein RadA	-
HQ939_RS09040 (HQ939_09050)	gmk	1796564..1797190 (-)	627	WP_075606467.1	guanylate kinase	-

Sequence

Protein

Download Length: 398 a.a. Molecular weight: 45737.52 Da Isoelectric Point: 10.1227

                                >NTDB_id=451408 HQ939_RS09020 WP_075606470.1 1791678..1792874(-) (pilC) [Glaesserella parasuis strain YHP170504]

MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKRLQQKGYSQLRISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS

LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFEKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLTKKIK

KILFYPVFILAVSITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSNFLQHSILTLIILCVLCFLLIHILNKKTDL

IKRLKFIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQRSLATTLTYLKQGYRLADSLD

PKLFPTDMLQMIAIGEQSGKLSPMLQQISDGYQQRLDYQIDILSQLLEPMLMVLMGIIVGTILVGLYLPIFDMGAMIE

Nucleotide

Download Length: 1197 bp

                                >NTDB_id=451408 HQ939_RS09020 WP_075606470.1 1791678..1792874(-) (pilC) [Glaesserella parasuis strain YHP170504]

ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGACAAAAGCAAACAGGGCGACAGCTTGCCGAAAG

CAGAGAAGTGCTAGAAAAACGCTTGCAACAAAAAGGCTATAGCCAGTTACGCATTAGCCGACATTTTGCCTTGCCGACGG

CACCGAAAAAGGAAGAAATTAATCAATTTATGCAACAGTTGGCATTATTAATTCAAGCCAAAATCCCCCTAAAACAGAGT

TTGGTAATGTTGCTGGAAACTTGCCAAAATCGCACCTTTTACCGTTGGCAACAAGAGACAATCCGCTTGATTGAAGCTGG

CTTTGCCCTATCCGTTGCCTTTGAAAAACAGGGGAAATATATCAATCCACAAGAGATCCAATTAATTAAAATGGCAGAAA

CAAGCGGTAATTTAGGGCTGATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAACTAACCAAGAAAATTAAA

AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTGTTTCAATCACACTCTCTATTTTATTATTACTTTTTATTGTGCCACA

ATTTGCAGAACTTTATGGATCAAAAGGAAAATCATTACCCCTAATTACCGAAATACTCTTTAGCCTATCCAATTTTCTAC

AACACTCTATTTTAACGCTAATTATCTTATGTGTGTTATGTTTTCTTTTAATTCATATTTTAAATAAAAAAACAGATCTT

ATTAAACGCCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT

TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG

ATGATATTTTATTACAACGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGTTATCGTTTAGCCGACAGTTTAGAT

CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA

AATCAGCGACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT

TAATGGGAATTATTGTAGGAACTATTTTAGTCGGGTTATATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilC	Glaesserella parasuis strain SC1401	98.492	100	0.985
pilC	Haemophilus influenzae 86-028NP	38.404	100	0.387
pilC	Haemophilus influenzae Rd KW20	38.404	100	0.387

Detailed information NTG0451408